Dirichlet Multinomial Modeling of Relative Abundance Data

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Documentation for package ‘CNVRG’ version 1.0.0

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CNVRG-package The 'CNVRG' package.
CNVRG The 'CNVRG' package.
cnvrg_HMC Perform Hamiltonian Monte Carlo sampling
cnvrg_VI Perform variational inference sampling
diff_abund Calculate features with different abundances between treatment groups
diversity_calc Calculate diversity entropies for each replicate
extract_pi_quantiles Extract quantiles of pi parameters
extract_point_estimate Extract point estimates of multinomial and Dirichlet parameters
fungi Fungal endophytes of Astragalus lentiginosus grown near Reno, NV
indexer Determine indices for treatment groups
isd_transform Transform data into estimates of absolute abundances using an ISD