Ordination and Multivariate Analysis for Ecology

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Documentation for package ‘labdsv’ version 2.1-0

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abundtrans Species Abundance Data Transformation
abuocc Abundance/Occurrence Graphical Analysis
as.dsvord Convert existing and external ordinations to dsv format
as.euclidean Nearest Euclidean Space Representation of a Dissimilarity Object
as.metric Nearest Metric Space Representation of a Dissimilarity Object
bestnmds Nonmetric Multidimensional Scaling
besttsne t-Distributed Stochastic Neighbor Embedding
brycesite Site Data for Bryce Canyon National Park
bryceveg Bryce Canyon Vegetation Data
calibrate Calculate fitted environmental attributes in an ordination
calibrate.dsvord Calculate fitted environmental attributes in an ordination
ccm Community Composition Modeling
chullord.dsvord Plotting Routines For LabDSV Ordinations
compspec Compositional Specificity Analysis
concov Constancy-Coverage Table for Ecological Community Data
const Constancy Table
convex Convex Data Transformation
defactorize Change Factors in Data.frames to Character Vectors
dematrify Create Three Column Database Form Data Frame from Sparse Data Frames
density.dsvord Plotting Routines For LabDSV Ordinations
dga Direct Gradient Analysis
disana Dissimilarity Analysis
dropplt Dropping Plots with Missing Values From Taxon and Site Data Frames
dropspc Dropping Species with Few Occurrences
dsvdis Dissimilarity Indices and Distance Measures
dsvls LabDSV Object ls() Command
duarm Indicator Species Analysis Minimizing Intermediate Occurrences
duleg Dufrene-Legendre Indicator Species Analysis
ellip Plotting Routines For LabDSV Ordinations
ellip.dsvord Plotting Routines For LabDSV Ordinations
envrtest Environmental Distribution Test
euclidify Nearest Euclidean Space Representation of a Dissimilarity Object
factorize Change Character Vectors in Data.frames to Factors
gsr Global Search and Replace for Data.frames
hellinger Hellinger Data Transformation
hilight.dsvord Plotting Routines For LabDSV Ordinations
homoteneity Homoteneity Analysis of Classified Ecological Communities
importance Importance Table
importance.default Importance Table
indspc Compositional Specificity Analysis
indval Dufrene-Legendre Indicator Species Analysis
indval.default Dufrene-Legendre Indicator Species Analysis
indval.stride Dufrene-Legendre Indicator Species Analysis
is.metric Nearest Metric Space Representation of a Dissimilarity Object
isamic Indicator Species Analysis Minimizing Intermediate Occurrences
loadings Principal Components Analysis
loadings.pca Principal Components Analysis
matrify Create Taxon Data.frames From Three Column Database Form
metrify Nearest Metric Space Representation of a Dissimilarity Object
neighbors Neighbors
nmds Nonmetric Multidimensional Scaling
ordcomm Re-Order the Rows and Columns of a Taxon Data Frame
ordcomp Ordination to Dissimilarity Comparison
orddist Ordination Point Pair-Wise Distance Calculation
ordneighbors Nearest Neighbors Plotted in Ordination Space
ordpart Ordination Partitioning
ordpart.dsvord Ordination Partitioning
ordpart.nmds Ordination Partitioning
ordpart.pca Ordination Partitioning
ordpart.pco Ordination Partitioning
ordtest Ordination Distribution Test
pca Principal Components Analysis
pco Principal Coordinates Analysis
plot.compspec Compositional Specificity Analysis
plot.dsvord Plotting Routines For LabDSV Ordinations
plot.thull Plotting a Tensioned Hull
plotid.dsvord Plotting Routines For LabDSV Ordinations
points.dsvord Plotting Routines For LabDSV Ordinations
predict Predict species abundances in an ordination
predict.dsvord Predict species abundances in an ordination
raretaxa Identify Rare Taxa in a Data Set
reconcile Reconcile Community and Site Data.Frames
rndcomm Randomize a Community Data.Frame
rnddist Random Distance
rndtaxa Randomize a Community Data.Frame
samptot Sample total standardization
scores Principal Components Analysis
scores.pca Principal Components Analysis
spcdisc Species Discrimination Analysis
spcmax Species Maximum Standardization
stepdist Step-Across Distance
summary Principal Components Analysis
summary.indval Dufrene-Legendre Indicator Species Analysis
summary.pca Principal Components Analysis
surf.dsvord Plotting Routines For LabDSV Ordinations
thull Plotting a Tensioned Hull
thull.dsvord Plotting Routines For LabDSV Ordinations
tsne t-Distributed Stochastic Neighbor Embedding
varplot Principal Components Analysis
varplot.pca Principal Components Analysis
vegtab Vegetation Table