Tests of Multispecies Coalescent Gene Tree Simulator Output

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Documentation for package ‘MSCsimtester’ version 1.0.0

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ADtest Anderson-Darling test comparing sample and theoretical pairwise distance distributions.
genetreeSample Simulated gene tree dataset.
MSCsimtester Validity tests of simulators of the multspecies coalescent model in phylogenomics.
pairwiseDist Compute and plot sample and theoretical pairwise distance densities.
plotEdgeOrder Plot species tree, with edge numbers on edges.
plotPops Plot species tree, with population sizes on edges.
print.ADtestOutput Print function for objects of class 'ADtestOutput'.
print.rootedTripleOutput Print function for objects of class 'rootedTripleOutput'.
rootedTriple Compare expected and sample frequencies of topological rooted triples.