make.asr.joint |
Ancestral State Reconstruction |
make.asr.joint.mk2 |
Ancestral State Reconstruction Under Mk2/Mkn |
make.asr.joint.mkn |
Ancestral State Reconstruction Under Mk2/Mkn |
make.asr.marginal |
Ancestral State Reconstruction |
make.asr.marginal.bisse |
Ancestral State Reconstruction Under BiSSE |
make.asr.marginal.mk2 |
Ancestral State Reconstruction Under Mk2/Mkn |
make.asr.marginal.mkn |
Ancestral State Reconstruction Under Mk2/Mkn |
make.asr.marginal.musse |
Ancestral State Reconstruction Under BiSSE |
make.asr.stoch |
Ancestral State Reconstruction |
make.asr.stoch.mk2 |
Ancestral State Reconstruction Under Mk2/Mkn |
make.asr.stoch.mkn |
Ancestral State Reconstruction Under Mk2/Mkn |
make.bd |
Constant Rate Birth-Death Models |
make.bd.split |
Constant Rate Birth-Death Models: Split Models |
make.bd.t |
Time-varing Birth-Death Models |
make.bisse |
Binary State Speciation and Extinction Model |
make.bisse.split |
Binary State Speciation and Extinction Model: Split Models |
make.bisse.t |
Binary State Speciation and Extinction Model: Time Dependant Models |
make.bisse.td |
Binary State Speciation and Extinction Model: Time Dependant Models |
make.bisse.uneven |
Binary State Speciation and Extinction Model: Split Models |
make.bisseness |
Binary State Speciation and Extinction (Node Enhanced State Shift) Model |
make.bm |
Brownian Motion and Related Models of Character Evolution |
make.brownian.with.drift |
Support Functions for QuaSSE Models |
make.clade.tree |
Make a "Clade Tree" |
make.classe |
Cladogenetic State change Speciation and Extinction Model |
make.eb |
Brownian Motion and Related Models of Character Evolution |
make.geosse |
Geographic State Speciation and Extinction Model |
make.geosse.split |
Geographic State Speciation and Extinction Model: Split Models |
make.geosse.t |
Geographic State Speciation and Extinction Model: Time Dependent Models |
make.geosse.uneven |
Geographic State Speciation and Extinction Model: Split Models |
make.lambda |
Brownian Motion and Related Models of Character Evolution |
make.linear.x |
Support Functions for QuaSSE Models |
make.mk2 |
Mk2 and Mk-n Models of character evolution |
make.mkn |
Mk2 and Mk-n Models of character evolution |
make.mkn.meristic |
Mk2 and Mk-n Models of character evolution |
make.mkn.multitrait |
MuSSE: Multi-State Speciation and Extinction (Multiple Binary Traits Version) |
make.musse |
MuSSE: Multi-State Speciation and Extinction |
make.musse.multitrait |
MuSSE: Multi-State Speciation and Extinction (Multiple Binary Traits Version) |
make.musse.split |
Multiple State Speciation and Extinction Model: Split Models |
make.musse.t |
Multiple State Speciation and Extinction Model: Time Dependent Models |
make.musse.td |
Multiple State Speciation and Extinction Model: Time Dependent Models |
make.ou |
Brownian Motion and Related Models of Character Evolution |
make.pgls |
Phylogenetic Generalised Least Squares |
make.prior |
Simple Prior Functions |
make.prior.exponential |
Simple Prior Functions |
make.prior.uniform |
Simple Prior Functions |
make.quasse |
Quantitative State Speciation and Extinction Model |
make.quasse.split |
Quantitative State Speciation and Extinction Model: Split Models |
make.sim.character |
Simulate a Character Distribution on a Tree |
make.yule |
Constant Rate Birth-Death Models |
mcmc |
Simple Markov Chain Monte Carlo with Slice Sampling |
mcmc.default |
Simple Markov Chain Monte Carlo with Slice Sampling |
mkn.multitrait.translate |
MuSSE: Multi-State Speciation and Extinction (Multiple Binary Traits Version) |
musse.multitrait.translate |
MuSSE: Multi-State Speciation and Extinction (Multiple Binary Traits Version) |