Peptide Array Analysis Tools

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Documentation for package ‘VDAP’ version 2.0.0

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aaDist Position Independent Amino Acid Distributions
aaStruct Positional Amino Acid Composition Calculations
Attrib Calculate Peptide Length and Charge Attributes
Dups Average duplicated peptides from a VDAP dataset
genPep Peptide generator based on the output of functions 'vComp' or 'vMotif'
hitSel Signal Based Hits Selection for VDAP
KdA Peptide Dissociation Rate Constant (Kd) Calculations
lcScan Signal or Kd Distributions separated by Length/Charge attributes
QCKd Quality Control of Peptides Based on Reproducibility and Kd
QCon Subsetting for VDAP function QCKd
resSep Select Peptides with the Specified Amino Acid Residue(s) at an Indicated Position
vComp Amino Acid Disbutions by Position at Various Length/Charge
vComp.l Amino Acid Disbutions by Position at Various Length/Charge
vComp.lc Amino Acid Disbutions by Position at Various Length/Charge
vFormat Length/Charge/Kd Peptide Calculations and File Assembly
vMotif Generate Signal Weighted Amino Acid Heat Maps by Position
vMotif.l Generate Signal Weighted Amino Acid Heat Maps by Position
vMotif.lc Generate Signal Weighted Amino Acid Heat Maps by Position
vSep Select Peptides of a Particular Length/Charge Combination