Calculate Ecological Information and Diatom Based Indices
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Documentation for package ‘diathor’ version 0.1.0
Help Pages
| cemfgs_rb | CEMFGS_RB |
| dbc_offline | DBC (offline) |
| des | DES |
| diaThor | DiaThor: A package to calculate multiple diatom-based biotic indices |
| diaThorAll | Runs all the DiaThor functions in a pipeline |
| diat_cemfgs_rb | Calculate the combined classification of ecological guilds and size classes for diatoms |
| diat_checkName | Searches all the taxa database for the input name |
| diat_des | Calculates the Descy Index (DES) |
| diat_disp | Calculates the Diatom Index for Soda Pans (DISP) |
| diat_diversity | Calculate diversity parameters for diatoms using the vegan package |
| diat_epid | Calculates the EPID index (EPID) |
| diat_getDiatBarcode | Loads the 'Diat.Barcode' database into DiaThor in the correct format |
| diat_guilds | Calculate ecological guilds for diatoms |
| diat_idap | Calculates the Indice Diatomique Artois-Picardie (IDAP) |
| diat_idch | Calculates the Swiss Diatom Index (IDCH) |
| diat_idp | Calculates the Pampean Diatom Index (IDP) |
| diat_ilm | Calculates the ILM Index (ILM) |
| diat_ips | Calculates the Specific Polluosensitivity Index (IPS) index |
| diat_loadData | Loads the Data into DiaThor in the correct format |
| diat_lobo | Calculates the Lobo Index (LOBO) |
| diat_morpho | Calculate morphological parameters for diatoms |
| diat_pbidw | Calculates the PBIDW Index (PBIDW) |
| diat_sampleData | Sample Data |
| diat_size | Calculate size classes for diatoms |
| diat_sla | Calculates the Sladecek Index (SLA) |
| diat_spear | Calculates the SPEAR(herbicides) Index (SPEAR) |
| diat_taxaList | Creates a single list with taxa names from all indices within DiaThor |
| diat_tdi | Calculates the Trophic (TDI) index |
| diat_vandam | Calculates ecological information for diatoms based on the Van Dam classification |
| disp | DISP |
| epid | EPID |
| idap | IDAP |
| idch | ID-CH |
| idp | IDP |
| ilm | ILM |
| ips | IPS |
| lobo | LOBO |
| pbidw | PBIDW |
| sla | SLA |
| spear | SPEAR(h) |
| taxaList | taxaList |
| tdi | TDI |