Length-Based Spawning Potential Ratio

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Documentation for package ‘LBSPR’ version 0.1.6

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

calcCurves	Calculate Relative Yield, YPR, SPR, SSB, and Recruitment curves for F/M
DataDir	Report the location of the Data Files
FilterSmooth	Kalman filter and Rauch-Tung-Striebel smoother
getFMfun	Calculate F/M given SPR and other parameters
initialize-method	Create a new LB_lengths object
initialize-method	Create a new LB_obj object
initialize-method	Create a new LB_pars object
LBSPRfit	Fit LBSPR model to length data
LBSPRfit_	Internal function to fit LBSPR model to length data
LBSPRopt	Optimisation Routine for fitting LBSPR
LBSPRsim	LBSPR Simulation Model
LBSPRsim_	Internal LBSPR Simulation Model
LBSPR_NLLabsel	LBSPR Optimization function for age-based selectivity model
LBSPR_NLLgtg	LBSPR Optimization function for GTG model
LB_lengths-class	An S4 class containing length data
LB_obj-class	An S4 class containing all parameters for the LBSPR model
LB_pars-class	An S4 class containing life history and other parameters
plotCurves	Plot the Relative Yield, YPR, SPR, SSB, and Recruitment curves
plotEsts	Plot LBSPR model estimates
plotMat	Plot the maturity-at-length and selectivity-at-length curves
plotSim	General plotting function for simulated data
plotSize	Plot the size data and model fits
plotSPRCirc	Circle of estimated SPR and target and limit points
plotTarg	Plot sampled length structure against target simulated size composition
Shiny	Run a Shiny Application