Analyses of Cancer Gene Interaction
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘cancerGI’ version 1.0.1
Help Pages
| computeSmallWorldness | Compute smallworldness of a graph |
| computeSurvivalPValueForGenePairSet.output | Survival analysis for pairs of genes |
| computeSurvivalPValueGenePairAll.output | Survival analysis for pairs of genes (with matched individuals) |
| computeSurvivalPValueOneGenePair | Survival analysis for one pair of genes |
| computeSurvivalPValueOneGenePair.output | Write results from survival analysis to output for one pair of genes |
| constructDesignMatrix | Generate a design matrix from raw RNAi data. |
| mutations | Genetic mutation data in patients. |
| processDataMutSurv | Find matched individuals in mutation and survival data |
| RNAi | Molecular phenotypes from single and double knockdowns in RNAi screen |
| survival | Patient survival data. |
| tested_pairs | Gene pairs tested in the double knockdown assay. |
| testMutationalPatternAll.wrapper | Compute the p and q values of all pairwise gene mutation patterns |