computeSmallWorldness |
Compute smallworldness of a graph |
computeSurvivalPValueForGenePairSet.output |
Survival analysis for pairs of genes |
computeSurvivalPValueGenePairAll.output |
Survival analysis for pairs of genes (with matched individuals) |
computeSurvivalPValueOneGenePair |
Survival analysis for one pair of genes |
computeSurvivalPValueOneGenePair.output |
Write results from survival analysis to output for one pair of genes |
constructDesignMatrix |
Generate a design matrix from raw RNAi data. |
mutations |
Genetic mutation data in patients. |
processDataMutSurv |
Find matched individuals in mutation and survival data |
RNAi |
Molecular phenotypes from single and double knockdowns in RNAi screen |
survival |
Patient survival data. |
tested_pairs |
Gene pairs tested in the double knockdown assay. |
testMutationalPatternAll.wrapper |
Compute the p and q values of all pairwise gene mutation patterns |