Download and Extract Data from US EPA's ECOTOX Database

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Documentation for package ‘ECOTOXr’ version 1.0.9

Help Pages

as.cas Functions for handling chemical abstract service (CAS) registry numbers
as.character.cas Functions for handling chemical abstract service (CAS) registry numbers
as.data.frame.cas Functions for handling chemical abstract service (CAS) registry numbers
as.double.cas Functions for handling chemical abstract service (CAS) registry numbers
as.integer.cas Functions for handling chemical abstract service (CAS) registry numbers
as.list.cas Functions for handling chemical abstract service (CAS) registry numbers
build_ecotox_sqlite Build an SQLite database from zip archived tables downloaded from EPA website
c.cas Functions for handling chemical abstract service (CAS) registry numbers
cas Functions for handling chemical abstract service (CAS) registry numbers
check_ecotox_availability Check whether a ECOTOX database exists locally
check_ecotox_build Check the locally build database for validity
check_ecotox_version Check if the locally build database is up to date
cite_ecotox Cite the downloaded copy of the ECOTOX database
dbConnectEcotox Open or close a connection to the local ECOTOX database
dbDisconnectEcotox Open or close a connection to the local ECOTOX database
download_ecotox_data Download and extract ECOTOX database files and compose database
format.cas Functions for handling chemical abstract service (CAS) registry numbers
get_ecotox_info Get information on the local ECOTOX database when available
get_ecotox_path The local path to the ECOTOX database (directory or sqlite file)
get_ecotox_sqlite_file The local path to the ECOTOX database (directory or sqlite file)
get_ecotox_url Get ECOTOX download URL from EPA website
is.cas Functions for handling chemical abstract service (CAS) registry numbers
list_ecotox_fields List the field names that are available from the ECOTOX database
list_ecotox_web_fields Search and retrieve toxicity records from the on-line database
print.cas Functions for handling chemical abstract service (CAS) registry numbers
search_ecotox Search and retrieve toxicity records from the database
search_ecotox_lazy Search and retrieve toxicity records from the database
search_query_ecotox Search and retrieve toxicity records from the database
show.cas Functions for handling chemical abstract service (CAS) registry numbers
websearch_comptox Search and retrieve substance information from <https://comptox.epa.gov/dashboard>
websearch_ecotox Search and retrieve toxicity records from the on-line database
[.cas Functions for handling chemical abstract service (CAS) registry numbers
[<-.cas Functions for handling chemical abstract service (CAS) registry numbers
[[.cas Functions for handling chemical abstract service (CAS) registry numbers
[[<-.cas Functions for handling chemical abstract service (CAS) registry numbers