GillespieSSA2-package |
'GillespieSSA2': Gillespie's Stochastic Simulation Algorithm for impatient people. |
compile_reactions |
Precompile the reactions |
GillespieSSA2 |
'GillespieSSA2': Gillespie's Stochastic Simulation Algorithm for impatient people. |
ode_em |
Euler-Maruyama method (EM) |
plot_ssa |
Simple plotting of ssa output |
port_reactions |
Port GillespieSSA parameters to GillespieSSA2 |
print.SSA_method |
Print various SSA objects |
print.SSA_reaction |
Print various SSA objects |
reaction |
Define a reaction |
ssa |
Invoking the stochastic simulation algorithm |
ssa_btl |
Binomial tau-leap method (BTL) |
ssa_etl |
Explicit tau-leap method (ETL) |
ssa_exact |
Exact method |