FAIR Data - Workflow Management

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Documentation for package ‘D4TAlink.light’ version 2.1.14

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

archiveTask	Create an archive containing the files of a given task.
binaryDir	Get path of binary directory.
binaryFn	Get path of binary file.
catReport	Output R object using function cat.
D4getenv	Get env var.
D4TAlink-common-args	Arguments used across the functions of the D4TAlink package.
D4TAlinkTask	'D4TAlinkTask' Documentation of the D4TAlinkTask class
datasourceDir	Get path of data source directory.
datasourceFn	Get path of data source file.
docDir	Get path of documentation directory.
docFn	Get path of documentation file.
DTx	Generic function.
formatTaskDocx	Replace default task fields in 'docx' file.
getTaskAuthor	Get the name of the task author.
getTaskEnckey	Get the encryption key for binary data files.
getTaskFilepath	Get the path of a file.
getTaskPaths	Get the paths of the task.
getTaskRmdTemplate	Get the path to the Rmd task template.
getTaskRoot	Get the root of the task repository.
getTaskRscriptTemplate	Get the path to the R script task template.
getTaskSponsor	Get the name of the task sponsor.
getTaskStructure	Get repository directory structure.
initTask	Initialize a task
initTaskRmd	Create task template in Rmd format.
initTaskRscript	Create task R script.
jpegReport	Graphics devices for 'JPEG' format bitmap files.
jpegReportFn	Get path of 'jpeg' output file.
listTaskFiles	List the files associated to a task.
listTasks	List details of all tasks stored in the root directory.
loadTask	Load a task.
pathsDefault	Task paths generator.
pathsGLPG	Task paths generator.
pathsPMS	Task paths generator.
pdfReport	Graphics devices for 'pdf' format bitmap files.
pdfReportFn	Get path of 'pdf' output file.
pngReport	Graphics devices for 'PNG' format bitmap files.
pngReportFn	Get path of 'png' output file.
progDir	Get path of scripts directory.
readBinary	Restore R object from binary file.
readReportJSON	Read JSON data into R object.
readReportTable	Read data into vector or list using function 'scan'.
renderTaskRmd	Render the task from the Rmd file
reportDir	Get path of report directory.
reportFn	Get path of output file.
reportXlsFn	Get path of 'xlsx' output file.
restoreTask	Restore an archive containing the files of a given task from a file created with archiveTask.
rmdFn	Get path of R script file name.
rscriptFn	Get path of R script file name.
saveBinary	Save R object in binary file.
saveBinaryE	Save R object in encrypted binary file.
saveReportJSON	Output R object in JSON format.
saveReportTable	Output R object using function 'write.csv'.
saveReportXls	Save R object in binary file.
scanReport	Read data into vector or list using function 'scan'.
setTaskAuthor	Set the name of the tasks author.
setTaskEnckey	Set the encryption key for binary data files.
setTaskRmdTemplate	Set the path to the Rmd task template.
setTaskRoot	Set the root of the task repository.
setTaskRscriptTemplate	Set the path to the R script task template.
setTaskSponsor	Set the name of the tasks sponsor.
setTaskStructure	Set task repository directory structure.
taskID	Get task identifier string.