Visualizing and Analyzing Animal Track Data

Documentation for package ‘move’ version 4.2.4

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A B C D E F G H I L M N O P R S T U misc

An overview of the functions in this package

-- A --

angle	Headings of the segments of a movement track
angle-method	Headings of the segments of a movement track
as.data.frame	Returns a Data Frame
as.data.frame-method	Returns a Data Frame

-- B --

brownian.bridge.dyn	Calculates a dynamic Brownian Bridge
brownian.bridge.dyn-method	Calculates a dynamic Brownian Bridge
brownian.motion.variance.dyn	Calculates the dynamic brownian motion variance
brownian.motion.variance.dyn-method	Calculates the dynamic brownian motion variance
burst	Bursting a track
burst-method	Bursting a track
burstId	Returns or sets the burstId
burstId-method	Returns or sets the burstId
burstId<-	Returns or sets the burstId
burstId<--method	Returns or sets the burstId

-- C --

citations	Extract the citation of a Move or MoveStack object
citations-method	Extract the citation of a Move or MoveStack object
citations<-	Extract the citation of a Move or MoveStack object
citations<--method	Extract the citation of a Move or MoveStack object
contour	Contour plot
contour-method	Contour plot
coordinates	Extract the track coordinates from a Move or MoveStack object
coordinates-method	Extract the track coordinates from a Move or MoveStack object
corridor	Corridor behavior identification
corridor-method	Corridor behavior identification

-- D --

DBBMM	The DBBMM class
DBBMM-class	The DBBMM class
DBBMMBurstStack	The DBBMMBurstStack class
DBBMMBurstStack-class	The DBBMMBurstStack class
DBBMMStack	The DBBMMStack class
dbbmmstack	Dynamic brownian bridges
DBBMMStack-class	The DBBMMStack class
dBGBvariance-class	The dynBGBvariance class
dBGBvarianceTmp-class	The dynBGBvariance class
dBMvariance-class	The dBMvariance class
dBMvarianceBurst-class	The dBMvariance class
dBMvarianceStack-class	The dBMvariance class
dBMvarianceTmp-class	The dBMvariance class
distance	Distance between the locations of a movement track
distance-method	Distance between the locations of a movement track
duplicatedDataExample	Tracking data example with duplicated timestamps
dynBGB	Calculation of the dynamic Bivariate Gausian Bridge
dynBGB-class	The dynBGB class
dynBGB-method	Calculation of the dynamic Bivariate Gausian Bridge
dynBGBvariance	Calculates the Bivariate Gaussian Bridge motion variance
dynBGBvariance-method	Calculates the Bivariate Gaussian Bridge motion variance

-- E --

emd	Earth movers distance
emd-method	Earth movers distance
equalProj	Checks projections for being equal
equalProj-method	Checks projections for being equal

-- F --

fishers

A MoveStack

-- G --

getDataRepositoryData	Download data from the Movebank Data Repository
getDataRepositoryData-method	Download data from the Movebank Data Repository
getDuplicatedTimestamps	Identifies duplicated timestamps
getDuplicatedTimestamps-method	Identifies duplicated timestamps
getMotionVariance	Extracts the estimated motion variance
getMotionVariance-method	Extracts the estimated motion variance
getMovebank	Download Data from Movebank
getMovebank-method	Download Data from Movebank
getMovebankAnimals	Animals, tags and IDs in a Movebank study
getMovebankAnimals-method	Animals, tags and IDs in a Movebank study
getMovebankData	Download data from Movebank as a Move object
getMovebankData-method	Download data from Movebank as a Move object
getMovebankID	Movebank Study ID
getMovebankID-method	Movebank Study ID
getMovebankLocationData	Download location data from Movebank as a table
getMovebankLocationData-method	Download location data from Movebank as a table
getMovebankNonLocationData	Download non-location data from Movebank
getMovebankNonLocationData-method	Download non-location data from Movebank
getMovebankReferenceTable	Download all reference data of a Movebank study
getMovebankReferenceTable-method	Download all reference data of a Movebank study
getMovebankSensors	Information about Movebank sensors
getMovebankSensors-method	Information about Movebank sensors
getMovebankSensorsAttributes	Available attributes of Movebank sensors
getMovebankSensorsAttributes-method	Available attributes of Movebank sensors
getMovebankStudies	All studies on Movebank
getMovebankStudies-method	All studies on Movebank
getMovebankStudy	Returns information of a Movebank study
getMovebankStudy-method	Returns information of a Movebank study
getVolumeUD	Utilization distribution (UD)
getVolumeUD-method	Utilization distribution (UD)

-- H --

hrBootstrap	Calculates and plots the area of the Minimum Convex Polygon of a track
hrBootstrap-method	Calculates and plots the area of the Minimum Convex Polygon of a track

-- I --

idData	Obtain or replace the idData slot of a Move object
idData-method	Obtain or replace the idData slot of a Move object
idData<-	Obtain or replace the idData slot of a Move object
idData<--method	Obtain or replace the idData slot of a Move object
interpolateTime	Interpolate a trajectory
interpolateTime-method	Interpolate a trajectory

-- L --

leroy	GPS track data from a fisher
leroydbbmm	Dynamic brownian bridges
leroydbgb	dynamic Bivariate Gausian Bridge example object
licenseTerms	Extract the license terms of a Move or MoveStack object
licenseTerms-method	Extract the license terms of a Move or MoveStack object
licenseTerms<-	Extract the license terms of a Move or MoveStack object
licenseTerms<--method	Extract the license terms of a Move or MoveStack object
lines	Plotting the lines of a track
lines-method	Plotting the lines of a track

-- M --

move	Create a Move object
Move-class	The Move class
move-method	Create a Move object
move2ade	Convert a Move or MoveStack object to a SpatialPointsDataFrame
move2ade-method	Convert a Move or MoveStack object to a SpatialPointsDataFrame
MovebankLogin	The MovebankLogin class
movebankLogin	Login into Movebank
MovebankLogin-class	The MovebankLogin class
movebankLogin-method	Login into Movebank
MoveBurst-class	MoveBurst class
MoveStack	The MoveStack class
moveStack	Creating a MoveStack
MoveStack-class	The MoveStack class
moveStack-method	Creating a MoveStack

-- N --

n.indiv	Extract the number of individuals of a MoveStack
n.indiv-method	Extract the number of individuals of a MoveStack
n.locs	Extract the number of locations of a Move or MoveStack object
n.locs-method	Extract the number of locations of a Move or MoveStack object
namesIndiv	Extract the names of the individuals of a move or moveStack object
namesIndiv-method	Extract the names of the individuals of a move or moveStack object

-- O --

outerProbability	Calculates the probabilities at the edges of a raster
outerProbability-method	Calculates the probabilities at the edges of a raster

-- P --

plot	Plotting track or raster
plot-method	Plotting track or raster
plotBursts	Plotting the centroids of a bursted track
plotBursts-method	Plotting the centroids of a bursted track
points	Plotting the points of a track
points-method	Plotting the points of a track

-- R --

raster	Extract raster topology from DBBMM or dynBGB
raster-method	Extract raster topology from DBBMM or dynBGB
raster2contour	Convert raster to contour lines
raster2contour-method	Convert raster to contour lines

-- S --

searchMovebankStudies	Search for a study on Movebank
searchMovebankStudies-method	Search for a study on Movebank
seglength	Segment lengths of a track
seglength-method	Segment lengths of a track
sensor	Extract the sensor of a Move unUsedRecords object
sensor-method	Extract the sensor of a Move unUsedRecords object
show	Show a Move, DBBMM, dynBGB object
show-method	Show a Move, DBBMM, dynBGB object
speed	Speed between the locations of a movement track
speed-method	Speed between the locations of a movement track
split	Splitting a MoveStack, MoveBurst or DBBMMStack
split-method	Splitting a MoveStack, MoveBurst or DBBMMStack
spTransform	Transform projection of movement track
spTransform-method	Transform projection of movement track
summary	Summary of Move, DBBMM, dynBGB objects
summary-method	Summary of Move, DBBMM, dynBGB objects

-- T --

thinDistanceAlongTrack	Thinning trajectories to a specific time interval or distance.
thinDistanceAlongTrack-method	Thinning trajectories to a specific time interval or distance.
thinTrackTime	Thinning trajectories to a specific time interval or distance.
thinTrackTime-method	Thinning trajectories to a specific time interval or distance.
timeLag	Time lags between the locations of a movement track
timeLag-method	Time lags between the locations of a movement track
timestamps	Extract or set the timestamps of a Move or MoveStack object
timestamps-method	Extract or set the timestamps of a Move or MoveStack object
timestamps<-	Extract or set the timestamps of a Move or MoveStack object
timestamps<--method	Extract or set the timestamps of a Move or MoveStack object
trackId	Returns trackId
trackId-method	Returns trackId
turnAngleGc	Turning angles on great circle tracks
turnAngleGc-method	Turning angles on great circle tracks

-- U --

UDStack	Creating UDStack objects
UDStack-class	The UD class
UDStack-method	Creating UDStack objects
unUsedRecords	Extracts or creates the unUsedRecords
unUsedRecords-method	Extracts or creates the unUsedRecords
unUsedRecords<-	Extracts or creates the unUsedRecords
unUsedRecords<--method	Extracts or creates the unUsedRecords

-- misc --

.MoveGeneral-class	The Move class
.MoveTrack	The Move class
.MoveTrack-class	The Move class
.MoveTrackSingle	The Move class
.MoveTrackSingle-class	The Move class
.MoveTrackSingleBurst-class	MoveBurst class
.MoveTrackStack-class	The MoveStack class
.UD	The UD class
.UD-class	The UD class
.UDBurstStack-class	The UD class
.UDStack-class	The UD class
.unUsedRecords-class	The .unUsedRecords and .unUsedRecordsStack class
.unUsedRecordsStack-class	The .unUsedRecords and .unUsedRecordsStack class
[,MoveStack,ANY,ANY-class	The MoveStack class
[-method	Subset movement tracks
[<--method	Subset movement tracks
[[-method	Subset movement tracks