as.igraph |
Convert mnda graph data to igraph |
as.mnda.graph |
Convert adjacency matrix to mnda graph data |
Distance |
Function to calculate distance between two vectors |
EDNN |
Encoder decoder neural network (EDNN) function |
ednn_IOprepare |
Preparing the input and output of the EDNN for a multiplex graph |
example_data |
Example Data |
mnda_distance_test_isn |
Test the embedding distances of local neighbors change between the two conditions for ISNs. |
mnda_embedding |
Calculate the embedding space for a multiplex network |
mnda_embedding_2layer |
Calculate the embedding space for a two layer multiplex network |
mnda_node_detection_2layer |
Detecting the nodes whose local neighbors change bweteen the two conditions. |
mnda_node_distance |
Detecting the nodes whose local neighbors change between the two conditions for ISNs. |
network_gen |
Multiplex Network Generation |
p_val_norm |
Calculate p.value for x given a Gaussian null pdf |
p_val_rank |
Calculate p.value for x given a null pdf using ranks |
Rank |
Ranking a vector |
RepRandomWalk |
Repetitive Fixed-length (weighted) random walk algorithm |
subgraph_difference_plot |
Visualization of a difference subgroup using a circular graph |
subgraph_plot |
Visualization of a subgroup using a circular graph |
WeightdRandomWalk |
Weighted Random Walk algorithm |