Analyzing and Interactive Visualization of Archival Tagging Data

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Documentation for package ‘RchivalTag’ version 0.1.9

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

abacus_plot	Abacus plot to illustrate the data coverage of different data products per tag throughout their deployment period.
bin_TempTS	bin depth-temperature time series data
classify_DayTime	Classifying the time period of the day
combine_histos	combine lists of TAD/TAT frequency data
dy_DepthTS	plot time series data via the dygraphs interactive time series plotting interface.
dy_TS	plot time series data via the dygraphs interactive time series plotting interface.
empty.plot_TS	plot time series data
empty.resample_TS	resample time series data at a lower resolution
get_DayTimeLimits	Estimating the timing of sunrise, sunset, astronomical and nautical twilight events
get_geopos	reads and plots geolocation estimates derived from archival tagging data
get_thermalstrat	estimate thermal stratification indices
ggboxplot_DepthTS_by_hour	Boxplot on hourly aggregated DepthTS records
ggplotly_geopos	Converts a ggplot2 object from ggplot_geopos() to plotly
ggplot_geopos	reads and plots geolocation estimates derived from archival tagging data
hist_tad	Time-at-Depth histogram
hist_tat	Time-at-Temperature histogram
image_TempDepthProfiles	plots interpolated daily temperature at depth profiles
interpolate_PDTs	interpolate daily temperature at depth profiles
interpolate_TempDepthProfiles	interpolate daily temperature at depth profiles
leaflet_geopos	reads and plots geolocation estimates derived from archival tagging data
merge_histos	merge and/or rebin TAD/TAT-frequency data
plot_data_coverage	Abacus plot to illustrate the data coverage of different data products per tag throughout their deployment period.
plot_DepthTempTS	plot Depth Temperature time series data
plot_DepthTempTS_resampled	plot Depth Temperature time series data
plot_DepthTempTS_resampled_PDT	plot Depth Temperature time series data
plot_DepthTS	plot time series data
plot_TS	plot time series data
RchivalTag	RchivalTag - Analyzing and Interactive Visualization of Archival Tagging Data
read_histos	reads a TAD/TAT-histogram file from archival tags
read_PDT	read PDT data from archival one or multiple tags
read_TS	reads Time Series Data from Archival Tags
rebin_histos	merge and/or rebin TAD/TAT-frequency data
resample_DepthTempTS	resample temperature at depth data from interpolated daily temperature at depth profiles or time series data
resample_PDT	resample temperature at depth data from interpolated daily temperature at depth profiles or time series data
resample_TS	resample time series data at a lower resolution
simulate_DepthTS	simulate depth time series data
ts2histos	convert depth and temperature time series data to discrete Time-at-Depth and Time-at-Temperature data (histogram data)
unmerge_histos	unmerge previously grouped or merged lists of TAD/TAT frequency data
update_leaflet_elementId	update elementID of the leaflet map to avoid rendering issues in RMarkdown