Plotting for Bayesian Models
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Documentation for package ‘bayesplot’ version 1.11.1
Help Pages
A B C F G H L M N O P R S T V X Y
| bayesplot-package | *bayesplot*: Plotting for Bayesian Models |
-- A --
| abline_01 | Convenience functions for adding or changing plot details |
| available_mcmc | Get or view the names of available plotting or data functions |
| available_ppc | Get or view the names of available plotting or data functions |
| available_ppd | Get or view the names of available plotting or data functions |
-- B --
| bayesplot | *bayesplot*: Plotting for Bayesian Models |
| bayesplot-colors | Set, get, or view *bayesplot* color schemes |
| bayesplot-extractors | Extract quantities needed for plotting from model objects |
| bayesplot-helpers | Convenience functions for adding or changing plot details |
| bayesplot_grid | Arrange plots in a grid |
| bayesplot_theme_get | Get, set, and modify the active *bayesplot* theme |
| bayesplot_theme_replace | Get, set, and modify the active *bayesplot* theme |
| bayesplot_theme_set | Get, set, and modify the active *bayesplot* theme |
| bayesplot_theme_update | Get, set, and modify the active *bayesplot* theme |
-- C --
| color_scheme_get | Set, get, or view *bayesplot* color schemes |
| color_scheme_set | Set, get, or view *bayesplot* color schemes |
| color_scheme_view | Set, get, or view *bayesplot* color schemes |
-- F --
| facet_bg | Convenience functions for adding or changing plot details |
| facet_text | Convenience functions for adding or changing plot details |
-- G --
| grid_lines | Convenience functions for adding or changing plot details |
-- H --
| hline_0 | Convenience functions for adding or changing plot details |
| hline_at | Convenience functions for adding or changing plot details |
-- L --
| lbub | Convenience functions for adding or changing plot details |
| legend_move | Convenience functions for adding or changing plot details |
| legend_none | Convenience functions for adding or changing plot details |
| legend_text | Convenience functions for adding or changing plot details |
| log_posterior | Extract quantities needed for plotting from model objects |
| log_posterior.CmdStanMCMC | Extract quantities needed for plotting from model objects |
| log_posterior.stanfit | Extract quantities needed for plotting from model objects |
| log_posterior.stanreg | Extract quantities needed for plotting from model objects |
-- M --
| MCMC | Plots for Markov chain Monte Carlo simulations |
| MCMC-combos | Combination plots |
| MCMC-diagnostics | General MCMC diagnostics |
| MCMC-distributions | Histograms and kernel density plots of MCMC draws |
| MCMC-intervals | Plot interval estimates from MCMC draws |
| MCMC-nuts | Diagnostic plots for the No-U-Turn-Sampler (NUTS) |
| MCMC-overview | Plots for Markov chain Monte Carlo simulations |
| MCMC-parcoord | Parallel coordinates plot of MCMC draws |
| MCMC-recover | Compare MCMC estimates to "true" parameter values |
| MCMC-scatterplots | Scatterplots of MCMC draws |
| MCMC-traces | Trace and rank plots of MCMC draws |
| mcmc_acf | General MCMC diagnostics |
| mcmc_acf_bar | General MCMC diagnostics |
| mcmc_areas | Plot interval estimates from MCMC draws |
| mcmc_areas_data | Plot interval estimates from MCMC draws |
| mcmc_areas_ridges | Plot interval estimates from MCMC draws |
| mcmc_areas_ridges_data | Plot interval estimates from MCMC draws |
| mcmc_combo | Combination plots |
| mcmc_dens | Histograms and kernel density plots of MCMC draws |
| mcmc_dens_chains | Histograms and kernel density plots of MCMC draws |
| mcmc_dens_chains_data | Histograms and kernel density plots of MCMC draws |
| mcmc_dens_overlay | Histograms and kernel density plots of MCMC draws |
| mcmc_hex | Scatterplots of MCMC draws |
| mcmc_hist | Histograms and kernel density plots of MCMC draws |
| mcmc_hist_by_chain | Histograms and kernel density plots of MCMC draws |
| mcmc_intervals | Plot interval estimates from MCMC draws |
| mcmc_intervals_data | Plot interval estimates from MCMC draws |
| mcmc_neff | General MCMC diagnostics |
| mcmc_neff_data | General MCMC diagnostics |
| mcmc_neff_hist | General MCMC diagnostics |
| mcmc_nuts_acceptance | Diagnostic plots for the No-U-Turn-Sampler (NUTS) |
| mcmc_nuts_divergence | Diagnostic plots for the No-U-Turn-Sampler (NUTS) |
| mcmc_nuts_energy | Diagnostic plots for the No-U-Turn-Sampler (NUTS) |
| mcmc_nuts_stepsize | Diagnostic plots for the No-U-Turn-Sampler (NUTS) |
| mcmc_nuts_treedepth | Diagnostic plots for the No-U-Turn-Sampler (NUTS) |
| mcmc_pairs | Scatterplots of MCMC draws |
| mcmc_parcoord | Parallel coordinates plot of MCMC draws |
| mcmc_parcoord_data | Parallel coordinates plot of MCMC draws |
| mcmc_rank_ecdf | Trace and rank plots of MCMC draws |
| mcmc_rank_hist | Trace and rank plots of MCMC draws |
| mcmc_rank_overlay | Trace and rank plots of MCMC draws |
| mcmc_recover_hist | Compare MCMC estimates to "true" parameter values |
| mcmc_recover_intervals | Compare MCMC estimates to "true" parameter values |
| mcmc_recover_scatter | Compare MCMC estimates to "true" parameter values |
| mcmc_rhat | General MCMC diagnostics |
| mcmc_rhat_data | General MCMC diagnostics |
| mcmc_rhat_hist | General MCMC diagnostics |
| mcmc_scatter | Scatterplots of MCMC draws |
| mcmc_trace | Trace and rank plots of MCMC draws |
| mcmc_trace_data | Trace and rank plots of MCMC draws |
| mcmc_trace_highlight | Trace and rank plots of MCMC draws |
| mcmc_violin | Histograms and kernel density plots of MCMC draws |
-- N --
| neff_ratio | Extract quantities needed for plotting from model objects |
| neff_ratio.CmdStanMCMC | Extract quantities needed for plotting from model objects |
| neff_ratio.stanfit | Extract quantities needed for plotting from model objects |
| neff_ratio.stanreg | Extract quantities needed for plotting from model objects |
| NUTS | Diagnostic plots for the No-U-Turn-Sampler (NUTS) |
| nuts_params | Extract quantities needed for plotting from model objects |
| nuts_params.CmdStanMCMC | Extract quantities needed for plotting from model objects |
| nuts_params.list | Extract quantities needed for plotting from model objects |
| nuts_params.stanfit | Extract quantities needed for plotting from model objects |
| nuts_params.stanreg | Extract quantities needed for plotting from model objects |
-- O --
| overlay_function | Convenience functions for adding or changing plot details |
-- P --
| pairs_condition | Scatterplots of MCMC draws |
| pairs_style_np | Scatterplots of MCMC draws |
| panel_bg | Convenience functions for adding or changing plot details |
| param_glue | Tidy parameter selection |
| param_range | Tidy parameter selection |
| parcoord_style_np | Parallel coordinates plot of MCMC draws |
| plot_bg | Convenience functions for adding or changing plot details |
| PPC | Graphical posterior predictive checking |
| PPC-censoring | PPC censoring |
| PPC-discrete | PPCs for discrete outcomes |
| PPC-distributions | PPC distributions |
| PPC-errors | PPC errors |
| PPC-intervals | PPC intervals |
| PPC-loo | LOO predictive checks |
| PPC-overview | Graphical posterior predictive checking |
| PPC-scatterplots | PPC scatterplots |
| PPC-statistics | PPC test statistics |
| PPC-test-statistics | PPC test statistics |
| ppc_bars | PPCs for discrete outcomes |
| ppc_bars_data | PPCs for discrete outcomes |
| ppc_bars_grouped | PPCs for discrete outcomes |
| ppc_boxplot | PPC distributions |
| ppc_data | PPC distributions |
| ppc_dens | PPC distributions |
| ppc_dens_overlay | PPC distributions |
| ppc_dens_overlay_grouped | PPC distributions |
| ppc_ecdf_overlay | PPC distributions |
| ppc_ecdf_overlay_grouped | PPC distributions |
| ppc_error_binned | PPC errors |
| ppc_error_data | PPC errors |
| ppc_error_hist | PPC errors |
| ppc_error_hist_grouped | PPC errors |
| ppc_error_scatter | PPC errors |
| ppc_error_scatter_avg | PPC errors |
| ppc_error_scatter_avg_grouped | PPC errors |
| ppc_error_scatter_avg_vs_x | PPC errors |
| ppc_freqpoly | PPC distributions |
| ppc_freqpoly_grouped | PPC distributions |
| ppc_hist | PPC distributions |
| ppc_intervals | PPC intervals |
| ppc_intervals_data | PPC intervals |
| ppc_intervals_grouped | PPC intervals |
| ppc_km_overlay | PPC censoring |
| ppc_km_overlay_grouped | PPC censoring |
| ppc_loo_intervals | LOO predictive checks |
| ppc_loo_pit | LOO predictive checks |
| ppc_loo_pit_data | LOO predictive checks |
| ppc_loo_pit_overlay | LOO predictive checks |
| ppc_loo_pit_qq | LOO predictive checks |
| ppc_loo_ribbon | LOO predictive checks |
| ppc_pit_ecdf | PPC distributions |
| ppc_pit_ecdf_grouped | PPC distributions |
| ppc_ribbon | PPC intervals |
| ppc_ribbon_data | PPC intervals |
| ppc_ribbon_grouped | PPC intervals |
| ppc_rootogram | PPCs for discrete outcomes |
| ppc_scatter | PPC scatterplots |
| ppc_scatter_avg | PPC scatterplots |
| ppc_scatter_avg_data | PPC scatterplots |
| ppc_scatter_avg_grouped | PPC scatterplots |
| ppc_scatter_data | PPC scatterplots |
| ppc_stat | PPC test statistics |
| ppc_stat_2d | PPC test statistics |
| ppc_stat_data | PPC test statistics |
| ppc_stat_freqpoly | PPC test statistics |
| ppc_stat_freqpoly_grouped | PPC test statistics |
| ppc_stat_grouped | PPC test statistics |
| ppc_violin_grouped | PPC distributions |
| PPD | Plots of posterior or prior predictive distributions |
| PPD-distributions | PPD distributions |
| PPD-intervals | PPD intervals |
| PPD-overview | Plots of posterior or prior predictive distributions |
| PPD-statistics | PPD test statistics |
| PPD-test-statistics | PPD test statistics |
| ppd_boxplot | PPD distributions |
| ppd_data | PPD distributions |
| ppd_dens | PPD distributions |
| ppd_dens_overlay | PPD distributions |
| ppd_ecdf_overlay | PPD distributions |
| ppd_freqpoly | PPD distributions |
| ppd_freqpoly_grouped | PPD distributions |
| ppd_hist | PPD distributions |
| ppd_intervals | PPD intervals |
| ppd_intervals_data | PPD intervals |
| ppd_intervals_grouped | PPD intervals |
| ppd_ribbon | PPD intervals |
| ppd_ribbon_data | PPD intervals |
| ppd_ribbon_grouped | PPD intervals |
| ppd_stat | PPD test statistics |
| ppd_stat_2d | PPD test statistics |
| ppd_stat_data | PPD test statistics |
| ppd_stat_freqpoly | PPD test statistics |
| ppd_stat_freqpoly_grouped | PPD test statistics |
| ppd_stat_grouped | PPD test statistics |
| pp_check | Posterior (or prior) predictive checks (S3 generic and default method) |
| pp_check.default | Posterior (or prior) predictive checks (S3 generic and default method) |
-- R --
| rhat | Extract quantities needed for plotting from model objects |
| rhat.CmdStanMCMC | Extract quantities needed for plotting from model objects |
| rhat.stanfit | Extract quantities needed for plotting from model objects |
| rhat.stanreg | Extract quantities needed for plotting from model objects |
-- S --
| scatter_style_np | Scatterplots of MCMC draws |
-- T --
| theme_default | Default *bayesplot* plotting theme |
| tidy-params | Tidy parameter selection |
| trace_style_np | Trace and rank plots of MCMC draws |
-- V --
| vline_0 | Convenience functions for adding or changing plot details |
| vline_at | Convenience functions for adding or changing plot details |
-- X --
| xaxis_text | Convenience functions for adding or changing plot details |
| xaxis_ticks | Convenience functions for adding or changing plot details |
| xaxis_title | Convenience functions for adding or changing plot details |
-- Y --
| yaxis_text | Convenience functions for adding or changing plot details |
| yaxis_ticks | Convenience functions for adding or changing plot details |
| yaxis_title | Convenience functions for adding or changing plot details |