findDampFactor |
findDampFactor |
seqfishplus |
SeqFISHplus dataset |
smfishHmrf |
smfishHmrf: A package for running hidden markov random field on smFISH and other spatial transcriptomic datasets |
smfishHmrf.generate.centroid |
Generate cluster centroids, where input is given as a matrix. |
smfishHmrf.generate.centroid.it |
Generate cluster centroids, where input is a file. |
smfishHmrf.generate.centroid.save |
Save the cluster centroids to file |
smfishHmrf.generate.centroid.use.exist |
Use existing cluster centroids |
smfishHmrf.hmrfem.multi |
Performs HMRF for multivariate normal distribution. Accepts R data structures as inputs. Accepts a single beta. |
smfishHmrf.hmrfem.multi.it |
Perform HMRF for multivariate normal distribution. Accepts R data structures as inputs. Accepts multiple betas. |
smfishHmrf.hmrfem.multi.it.min |
Perform HMRF on multivariate normal distributions. Accepts file names as inputs. Accepts multiple betas. |
smfishHmrf.hmrfem.multi.save |
Save the HMRF result |
smfishHmrf.read.expression |
smfishHmrf.read.expression |