Bayesian Model for Genotyping using RNA-Seq

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Documentation for package ‘bbmix’ version 1.0.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

bbmix-package	The 'bbmix' package.
bbmix	The 'bbmix' package.
call_gt	Call genotypes using beta binomial after model training
call_help	call gt helper, calculate mean dbetabinom from all posterior samples
ex_alt_hom	Exclude fSNPs with no alternative allele in any sample. Also exclude fSNPs if all samples are hom.
fit_bb	Fit beta binomial distribution to allelic counts for homozygous reference, heterozygous, homozygous alternative
gt_help	call gt helper, get posterior mean, expected gt and sd expected gt across all samples
poolreads	Pool randomly selected reads from different files