calcAfreq |
Calculate Allele Frequencies |
dres |
Dcifer results |
dsmp |
Sample data |
format |
Read and Reformat Data |
formatAfreq |
Read and Reformat Data |
formatDat |
Read and Reformat Data |
generateReval |
Grid of Parameter Values |
getCOI |
Calculate COI |
ibdDat |
Pairwise Relatedness |
ibdEstM |
Estimate Relatedness and a Number of Related Strains |
ibdPair |
Relatedness Between Two Samples |
logReval |
Logarithms of 'reval' |
matchAfreq |
Match Samples and Allele Frequencies |
plotColorbar |
Colorbar |
plotRel |
Plot Relatedness Estimates |
probUxUy |
Likelihood for U_x, U_y |
readAfreq |
Read and Reformat Data |
readDat |
Read and Reformat Data |
revals |
Parameter grid |