Process Orbitrap Isotopocule Data
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Documentation for package ‘isoorbi’ version 1.3.0
Help Pages
| orbi_add_blocks_to_plot | Plot blocks background |
| orbi_adjust_block | Manually adjust block delimiters |
| orbi_analyze_shot_noise | Shot noise calculation |
| orbi_calculate_ratios | Calculate direct isotopocule ratios |
| orbi_calculate_summarized_ratio | Calculate isotopocule ratio |
| orbi_default_theme | Default isoorbi plotting theme |
| orbi_define_basepeak | Define the denominator for ratio calculation |
| orbi_define_blocks_for_dual_inlet | Binning raw data into blocks for dual inlet analyses |
| orbi_define_block_for_flow_injection | Define data block for flow injection |
| orbi_export_data_to_excel | Export data frame to excel |
| orbi_filter_flagged_data | Filter out flagged data |
| orbi_filter_isox | Basic generic filter for IsoX data |
| orbi_filter_satellite_peaks | Function replaced by 'orbi_flag_satellite_peaks()' |
| orbi_filter_scan_intensity | Function replaced by 'orbi_flag_outliers()' |
| orbi_filter_weak_isotopocules | Function replaced by 'orbi_flag_weak_isotopocules()' |
| orbi_find_isox | Find isox files |
| orbi_flag_outliers | Flag outlier scans |
| orbi_flag_satellite_peaks | Flag minor satellite peaks |
| orbi_flag_weak_isotopocules | Flag weak isotopocules |
| orbi_get_blocks_info | Summarize blocks info |
| orbi_get_isotopocule_coverage | Calculate isotopocule coverage |
| orbi_get_settings | Get all isoorbi package settings |
| orbi_plot_isotopocule_coverage | Plot isotopocule coverage |
| orbi_plot_raw_data | Visualize raw data |
| orbi_plot_satellite_peaks | Visualize satellite peaks |
| orbi_plot_shot_noise | Make a shot noise plot |
| orbi_read_isox | Read IsoX file |
| orbi_segment_blocks | Segment data blocks |
| orbi_set_settings | Set package settings |
| orbi_simplify_isox | Simplify IsoX data |
| orbi_summarize_results | Generate the results table |