'teal' Modules for Standard Clinical Outputs

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Documentation for package ‘teal.modules.clinical’ version 0.9.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

teal.modules.clinical-package	'teal' Modules for Standard Clinical Outputs
add_expr	Expression List
as_num	Parse text input to numeric vector
as_num.character	Parse text input to numeric vector
as_num.default	Parse text input to numeric vector
as_num.factor	Parse text input to numeric vector
as_num.logical	Parse text input to numeric vector
as_num.numeric	Parse text input to numeric vector
bracket_expr	Expressions in Brackets
call_concatenate	Concatenate expressions via a binary operator
clean_description	Clean up categorical variable description
color_lab_values	Mapping function for Laboratory Table
column_annotation_label	Get full label, useful for annotating plots
cs_to_des_filter	Convert choices_selected to data_extract_spec with only filter_spec
cs_to_des_select	Convert choices_selected to data_extract_spec with only select_spec
cs_to_filter_spec	Convert choices_selected to filter_spec
cs_to_select_spec	Convert choices_selected to select_spec
default_total_label	Default string for total column label
extract_input	Extracts html id for 'data_extract_ui'
ex_data	Simulated 'CDISC' Data for Examples
get_var_labels	Get variable labels
h_concat_expr	Expression Deparsing
is.cs_or_des	Whether object is of class 'teal.transform::choices_selected()'
pipe_expr	Expressions as a Pipeline
prepare_arm	Expression: Arm Preparation
prepare_arm_levels	Expression: Prepare Arm Levels
set_default_total_label	Default string for total column label
split_choices	Split 'choices_selected' objects with interactions into their component variables
split_col_expr	Split-Column Expression
split_interactions	Split interaction terms into their component variables
teal.modules.clinical	'teal' Modules for Standard Clinical Outputs
tmc_ex_adae	Simulated 'CDISC' Data for Examples
tmc_ex_adaette	Simulated 'CDISC' Data for Examples
tmc_ex_adcm	Simulated 'CDISC' Data for Examples
tmc_ex_adeg	Simulated 'CDISC' Data for Examples
tmc_ex_adex	Simulated 'CDISC' Data for Examples
tmc_ex_adlb	Simulated 'CDISC' Data for Examples
tmc_ex_admh	Simulated 'CDISC' Data for Examples
tmc_ex_adqs	Simulated 'CDISC' Data for Examples
tmc_ex_adrs	Simulated 'CDISC' Data for Examples
tmc_ex_adsl	Simulated 'CDISC' Data for Examples
tmc_ex_adtte	Simulated 'CDISC' Data for Examples
tmc_ex_advs	Simulated 'CDISC' Data for Examples
tm_a_gee	teal Module: Generalized Estimating Equations (GEE) analysis
tm_a_mmrm	teal Module: Mixed Model Repeated Measurements (MMRM) Analysis
tm_g_barchart_simple	teal Module: Simple Bar Chart and Table of Counts per Category
tm_g_ci	teal Module: Confidence Interval Plot
tm_g_forest_rsp	teal Module: Forest Response Plot
tm_g_forest_tte	teal Module: Forest Survival Plot
tm_g_ipp	teal Module: Individual Patient Plots
tm_g_km	teal Module: Kaplan-Meier Plot
tm_g_lineplot	teal Module: Line Plot
tm_g_pp_adverse_events	teal Module: Patient Profile Adverse Events Table and Plot
tm_g_pp_patient_timeline	teal Module: Patient Profile Timeline Plot
tm_g_pp_therapy	teal Module: Patient Profile Therapy Table and Plot
tm_g_pp_vitals	teal Module: Patient Profile Vitals Plot
tm_t_abnormality	teal Module: Abnormality Summary Table
tm_t_abnormality_by_worst_grade	teal Module: Laboratory test results with highest grade post-baseline
tm_t_ancova	teal Module: ANCOVA Summary
tm_t_binary_outcome	teal Module: Binary Outcome Table
tm_t_coxreg	teal Module: Cox Regression Model
tm_t_events	teal Module: Events by Term
tm_t_events_by_grade	teal Module: Events by Grade
tm_t_events_patyear	teal Module: Event Rates Adjusted for Patient-Years
tm_t_events_summary	teal Module: Adverse Events Summary
tm_t_exposure	teal Module: Exposure Table for Risk management plan
tm_t_logistic	teal Module: Logistic Regression
tm_t_mult_events	teal Module: Multiple Events by Term
tm_t_pp_basic_info	teal Module: Patient Profile Basic Info
tm_t_pp_laboratory	teal Module: Patient Profile Laboratory Table
tm_t_pp_medical_history	teal Module: Patient Profile Medical History
tm_t_pp_prior_medication	teal Module: Patient Profile Prior Medication
tm_t_shift_by_arm	teal Module: Shift by Arm
tm_t_shift_by_arm_by_worst	teal Module: Shift by Arm by Worst Analysis Indicator Level
tm_t_shift_by_grade	teal Module: Grade Summary Table
tm_t_smq	teal Module: Adverse Events Table by Standardized MedDRA Query
tm_t_summary	teal Module: Summary of Variables
tm_t_summary_by	teal Module: Summarize Variables by Row Groups
tm_t_tte	teal Module: Time-To-Event Table