teal.modules.clinical-package |
'teal' Modules for Standard Clinical Outputs |
add_expr |
Expression List |
as_num |
Parse text input to numeric vector |
as_num.character |
Parse text input to numeric vector |
as_num.default |
Parse text input to numeric vector |
as_num.factor |
Parse text input to numeric vector |
as_num.logical |
Parse text input to numeric vector |
as_num.numeric |
Parse text input to numeric vector |
bracket_expr |
Expressions in Brackets |
call_concatenate |
Concatenate expressions via a binary operator |
clean_description |
Clean up categorical variable description |
color_lab_values |
Mapping function for Laboratory Table |
column_annotation_label |
Get full label, useful for annotating plots |
cs_to_des_filter |
Convert choices_selected to data_extract_spec with only filter_spec |
cs_to_des_select |
Convert choices_selected to data_extract_spec with only select_spec |
cs_to_filter_spec |
Convert choices_selected to filter_spec |
cs_to_select_spec |
Convert choices_selected to select_spec |
default_total_label |
Default string for total column label |
extract_input |
Extracts html id for 'data_extract_ui' |
ex_data |
Simulated 'CDISC' Data for Examples |
get_var_labels |
Get variable labels |
h_concat_expr |
Expression Deparsing |
is.cs_or_des |
Whether object is of class 'teal.transform::choices_selected()' |
pipe_expr |
Expressions as a Pipeline |
prepare_arm |
Expression: Arm Preparation |
prepare_arm_levels |
Expression: Prepare Arm Levels |
set_default_total_label |
Default string for total column label |
split_choices |
Split 'choices_selected' objects with interactions into their component variables |
split_col_expr |
Split-Column Expression |
split_interactions |
Split interaction terms into their component variables |
teal.modules.clinical |
'teal' Modules for Standard Clinical Outputs |
tmc_ex_adae |
Simulated 'CDISC' Data for Examples |
tmc_ex_adaette |
Simulated 'CDISC' Data for Examples |
tmc_ex_adcm |
Simulated 'CDISC' Data for Examples |
tmc_ex_adeg |
Simulated 'CDISC' Data for Examples |
tmc_ex_adex |
Simulated 'CDISC' Data for Examples |
tmc_ex_adlb |
Simulated 'CDISC' Data for Examples |
tmc_ex_admh |
Simulated 'CDISC' Data for Examples |
tmc_ex_adqs |
Simulated 'CDISC' Data for Examples |
tmc_ex_adrs |
Simulated 'CDISC' Data for Examples |
tmc_ex_adsl |
Simulated 'CDISC' Data for Examples |
tmc_ex_adtte |
Simulated 'CDISC' Data for Examples |
tmc_ex_advs |
Simulated 'CDISC' Data for Examples |
tm_a_gee |
teal Module: Generalized Estimating Equations (GEE) analysis |
tm_a_mmrm |
teal Module: Mixed Model Repeated Measurements (MMRM) Analysis |
tm_g_barchart_simple |
teal Module: Simple Bar Chart and Table of Counts per Category |
tm_g_ci |
teal Module: Confidence Interval Plot |
tm_g_forest_rsp |
teal Module: Forest Response Plot |
tm_g_forest_tte |
teal Module: Forest Survival Plot |
tm_g_ipp |
teal Module: Individual Patient Plots |
tm_g_km |
teal Module: Kaplan-Meier Plot |
tm_g_lineplot |
teal Module: Line Plot |
tm_g_pp_adverse_events |
teal Module: Patient Profile Adverse Events Table and Plot |
tm_g_pp_patient_timeline |
teal Module: Patient Profile Timeline Plot |
tm_g_pp_therapy |
teal Module: Patient Profile Therapy Table and Plot |
tm_g_pp_vitals |
teal Module: Patient Profile Vitals Plot |
tm_t_abnormality |
teal Module: Abnormality Summary Table |
tm_t_abnormality_by_worst_grade |
teal Module: Laboratory test results with highest grade post-baseline |
tm_t_ancova |
teal Module: ANCOVA Summary |
tm_t_binary_outcome |
teal Module: Binary Outcome Table |
tm_t_coxreg |
teal Module: Cox Regression Model |
tm_t_events |
teal Module: Events by Term |
tm_t_events_by_grade |
teal Module: Events by Grade |
tm_t_events_patyear |
teal Module: Event Rates Adjusted for Patient-Years |
tm_t_events_summary |
teal Module: Adverse Events Summary |
tm_t_exposure |
teal Module: Exposure Table for Risk management plan |
tm_t_logistic |
teal Module: Logistic Regression |
tm_t_mult_events |
teal Module: Multiple Events by Term |
tm_t_pp_basic_info |
teal Module: Patient Profile Basic Info |
tm_t_pp_laboratory |
teal Module: Patient Profile Laboratory Table |
tm_t_pp_medical_history |
teal Module: Patient Profile Medical History |
tm_t_pp_prior_medication |
teal Module: Patient Profile Prior Medication |
tm_t_shift_by_arm |
teal Module: Shift by Arm |
tm_t_shift_by_arm_by_worst |
teal Module: Shift by Arm by Worst Analysis Indicator Level |
tm_t_shift_by_grade |
teal Module: Grade Summary Table |
tm_t_smq |
teal Module: Adverse Events Table by Standardized MedDRA Query |
tm_t_summary |
teal Module: Summary of Variables |
tm_t_summary_by |
teal Module: Summarize Variables by Row Groups |
tm_t_tte |
teal Module: Time-To-Event Table |