MatrixEQTL-package |
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations |
as.matrix-method |
Class 'SlicedData' for storing large matrices |
colMeans-method |
Class 'SlicedData' for storing large matrices |
colnames-method |
Class 'SlicedData' for storing large matrices |
colnames<--method |
Class 'SlicedData' for storing large matrices |
colSums-method |
Class 'SlicedData' for storing large matrices |
Covariates |
Artificial data for Matrix eQTL sample code: Covariates. |
dim-method |
Class 'SlicedData' for storing large matrices |
GE |
Artificial data for Matrix eQTL sample code: Gene expression. |
geneloc |
Artificial data for Matrix eQTL sample code: Gene location file. |
length-method |
Class 'SlicedData' for storing large matrices |
MatrixEQTL |
Matrix eQTL: Ultra Fast eQTL Analysis via Large Matrix Operations |
MatrixEQTL_cis_code |
Sample code for cis/trans-eQTL analysis with Matrix eQTL |
Matrix_eQTL_engine |
Main function for fast eQTL analysis in MatrixEQTL package |
Matrix_eQTL_main |
Main function for fast eQTL analysis in MatrixEQTL package |
modelANOVA |
Constant for 'Matrix_eQTL_engine'. |
modelLINEAR |
Constant for 'Matrix_eQTL_engine'. |
modelLINEAR_CROSS |
Constant for 'Matrix_eQTL_engine'. |
NCOL-method |
Class 'SlicedData' for storing large matrices |
ncol-method |
Class 'SlicedData' for storing large matrices |
NROW-method |
Class 'SlicedData' for storing large matrices |
nrow-method |
Class 'SlicedData' for storing large matrices |
plot.MatrixEQTL |
Plot histogram or QQ-plot of all p-values |
rowMeans-method |
Class 'SlicedData' for storing large matrices |
rownames-method |
Class 'SlicedData' for storing large matrices |
rownames<--method |
Class 'SlicedData' for storing large matrices |
rowSums-method |
Class 'SlicedData' for storing large matrices |
show-method |
Class 'SlicedData' for storing large matrices |
SlicedData |
Class 'SlicedData' for storing large matrices |
SlicedData-class |
Class 'SlicedData' for storing large matrices |
SNP |
Artificial data for Matrix eQTL sample code: Genotype. |
snpsloc |
Artificial data for Matrix eQTL sample code: SNP location file. |
summary.SlicedData |
Class 'SlicedData' for storing large matrices |
[[-method |
Class 'SlicedData' for storing large matrices |
[[<--method |
Class 'SlicedData' for storing large matrices |