Cytoscape.js Shiny Widget (cyjShiny)

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Documentation for package ‘cyjShiny’ version 1.0.42

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

addGraphFromDataFrame	Add graph from data.frame
addGraphFromJsonFile	Add graph from JSON file
clearSelection	Clear selection all node and edge selections removed
cyjShiny	cyjShiny cyjShiny
cyjShinyOutput	Standard shiny ui rendering construct
dataFramesToJSON	Create a cytoscape.js JSON graph from one or two data.frames.
doLayout	Layout the current graph using the specified strategy.
fit	Set zoom and center of the graph display so that graph fills the display.
fitSelected	Set zoom and center of the graph display so that the currently selected nodes fill the display
getNodePositions	Get node positions
getSelectedNodes	Get Selected Nodes
graphNELtoJSON	Convert R graphNEL object to cytoscape.js JSON.
hideSelection	Hide selection all selected nodes and their edges are hidden
invertSelection	Invert selection all selected nodes and their edges are hidden
loadNetworkFromJSONFile	Load a standard cytoscape.js JSON network file
loadStyleFile	Load a standard cytoscape.js style file
readAndStandardizeJSONNetworkFile	Read in a JSON network file, identify (or add) elements field return JSON
readAndStandardizeJSONStyleFile	Read in a JSON file, extract the selector elements, return JSON
removeGraph	Remove the current graph
renderCyjShiny	More shiny plumbing - a cyjShiny wrapper for htmlwidget standard rendering operation
savePNGtoFile	Save a png rendering of the current network view to the specified filename
selectFirstNeighbors	Select first neighbors of the currently selected nodes
selectNodes	Select Nodes
setEdgeAttributes	Assign the supplied edge attribute values to the graph structure contained in the browser.
setNodeAttributes	Assign the supplied node attribute values to the graph structure contained in the browser.
setNodePositions	Set node positions from the supplied data.frame
showAll	Show all all selected nodes and their edges are hidden