addGraphFromDataFrame |
Add graph from data.frame |
addGraphFromJsonFile |
Add graph from JSON file |
clearSelection |
Clear selection all node and edge selections removed |
cyjShiny |
cyjShiny cyjShiny |
cyjShinyOutput |
Standard shiny ui rendering construct |
dataFramesToJSON |
Create a cytoscape.js JSON graph from one or two data.frames. |
doLayout |
Layout the current graph using the specified strategy. |
fit |
Set zoom and center of the graph display so that graph fills the display. |
fitSelected |
Set zoom and center of the graph display so that the currently selected nodes fill the display |
getNodePositions |
Get node positions |
getSelectedNodes |
Get Selected Nodes |
graphNELtoJSON |
Convert R graphNEL object to cytoscape.js JSON. |
hideSelection |
Hide selection all selected nodes and their edges are hidden |
invertSelection |
Invert selection all selected nodes and their edges are hidden |
loadNetworkFromJSONFile |
Load a standard cytoscape.js JSON network file |
loadStyleFile |
Load a standard cytoscape.js style file |
readAndStandardizeJSONNetworkFile |
Read in a JSON network file, identify (or add) elements field return JSON |
readAndStandardizeJSONStyleFile |
Read in a JSON file, extract the selector elements, return JSON |
removeGraph |
Remove the current graph |
renderCyjShiny |
More shiny plumbing - a cyjShiny wrapper for htmlwidget standard rendering operation |
savePNGtoFile |
Save a png rendering of the current network view to the specified filename |
selectFirstNeighbors |
Select first neighbors of the currently selected nodes |
selectNodes |
Select Nodes |
setEdgeAttributes |
Assign the supplied edge attribute values to the graph structure contained in the browser. |
setNodeAttributes |
Assign the supplied node attribute values to the graph structure contained in the browser. |
setNodePositions |
Set node positions from the supplied data.frame |
showAll |
Show all all selected nodes and their edges are hidden |