Cytoscape.js Shiny Widget (cyjShiny)


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Documentation for package ‘cyjShiny’ version 1.0.34

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addGraphFromDataFrame Add graph from data.frame
addGraphFromJsonFile Add graph from JSON file
clearSelection Clear selection all node and edge selections removed
cyjShiny cyjShiny cyjShiny
cyjShinyOutput Standard shiny ui rendering construct
dataFramesToJSON Create a cytoscape.js JSON graph from one or two data.frames.
doLayout Layout the current graph using the specified strategy.
fit Set zoom and center of the graph display so that graph fills the display.
fitSelected Set zoom and center of the graph display so that the currently selected nodes fill the display
getNodePositions Get node positions
getSelectedNodes Get Selected Nodes
graphNELtoJSON Convert R graphNEL object to cytoscape.js JSON.
hideSelection Hide selection all selected nodes and their edges are hidden
invertSelection Invert selection all selected nodes and their edges are hidden
loadNetworkFromJSONFile Load a standard cytoscape.js JSON network file
loadStyleFile Load a standard cytoscape.js style file
readAndStandardizeJSONNetworkFile Read in a JSON network file, identify (or add) elements field return JSON
readAndStandardizeJSONStyleFile Read in a JSON file, extract the selector elements, return JSON
removeGraph Remove the current graph
renderCyjShiny More shiny plumbing - a cyjShiny wrapper for htmlwidget standard rendering operation
savePNGtoFile Save a png rendering of the current network view to the specified filename
selectFirstNeighbors Select first neighbors of the currently selected nodes
selectNodes Select Nodes
setEdgeAttributes Assign the supplied edge attribute values to the graph structure contained in the browser.
setNodeAttributes Assign the supplied node attribute values to the graph structure contained in the browser.
setNodePositions Set node positions from the supplied data.frame
showAll Show all all selected nodes and their edges are hidden