SAVER-package |
SAVER: Single-cell Analysis Via Expression Recovery |
calc.a |
Optimizes variance |
calc.b |
Optimizes variance |
calc.estimate |
Calculate estimate |
calc.estimate.mean |
Calculate estimate |
calc.estimate.null |
Calculate estimate |
calc.k |
Optimizes variance |
calc.loglik.a |
Calculates marginal likelihood |
calc.loglik.b |
Calculates marginal likelihood |
calc.loglik.k |
Calculates marginal likelihood |
calc.maxcor |
Calculate maximum correlation |
calc.post |
Calculates SAVER posterior |
combine.saver |
Combines SAVER |
cor.cells |
Calculates gene-to-gene and cell-to-cell SAVER correlation |
cor.genes |
Calculates gene-to-gene and cell-to-cell SAVER correlation |
expr.predict |
Calculates SAVER prediction. |
get.mu |
Output prior predictions |
linnarsson |
Mouse brain single-cell RNA-seq dataset |
linnarsson_saver |
SAVER recovered mouse brain single-cell RNA-seq dataset |
sample.saver |
Samples from SAVER |
saver |
Runs SAVER |
saver.fit |
Fits SAVER |
saver.fit.mean |
Fits SAVER |
saver.fit.null |
Fits SAVER |