runSAM |
Run the sam webapp |
SAM |
Significance analysis of microarrays - simple user interface |
samr |
Significance analysis of microarrays |
samr.assess.samplesize |
Assess the sample size for a SAM analysis |
samr.assess.samplesize.plot |
Make a plot of the results from samr.assess.samplesize |
samr.compute.delta.table |
Compute delta table for SAM analysis |
samr.compute.siggenes.table |
Compute significant genes table |
samr.estimate.depth |
estimate the sequencing depth |
samr.missrate |
Estimate the miss rate table for a SAM analysis |
samr.norm.data |
output normalized sequencing data |
samr.plot |
Make Q-Q plot for SAM analysis |
samr.pvalues.from.perms |
Report estimated p-values for each gene, from a SAM analysis |
samr.tail.strength |
Estimate tail strength for a dataset, from a SAM analysis |
SAMseq |
Significance analysis of sequencing data - simple user interface |