SAM: Significance Analysis of Microarrays
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Documentation for package ‘samr’ version 3.0
Help Pages
| runSAM | Run the sam webapp |
| SAM | Significance analysis of microarrays - simple user interface |
| samr | Significance analysis of microarrays |
| samr.assess.samplesize | Assess the sample size for a SAM analysis |
| samr.assess.samplesize.plot | Make a plot of the results from samr.assess.samplesize |
| samr.compute.delta.table | Compute delta table for SAM analysis |
| samr.compute.siggenes.table | Compute significant genes table |
| samr.estimate.depth | estimate the sequencing depth |
| samr.missrate | Estimate the miss rate table for a SAM analysis |
| samr.norm.data | output normalized sequencing data |
| samr.plot | Make Q-Q plot for SAM analysis |
| samr.pvalues.from.perms | Report estimated p-values for each gene, from a SAM analysis |
| samr.tail.strength | Estimate tail strength for a dataset, from a SAM analysis |
| SAMseq | Significance analysis of sequencing data - simple user interface |