MALDIrppa-package |
MALDI mass spectra robust pre-processing and analysis |
addMetadata |
Add metadata to 'AbstractMassObject' class objects |
alignPeaks |
Compact peak alignment process for 'MassPeaks' objects |
countPeaks |
Count the number of peaks in 'MassPeaks' objects |
deletePeaks |
Delete peaks from a 'MassPeaks' objects |
detectOutliers |
Detection of outlying mass peak profiles |
importSpectra |
Convert mass spectra from text files into 'MassSpectrum' objects |
MALDIrppa |
MALDI mass spectra robust pre-processing and analysis |
peakPatterns |
Display peak presence/absence patterns |
plot.scSpectra |
Graphical summary of 'screenSpectra' objects |
rawToPeaks |
Create list of 'MassPeaks' objects |
rawToSpectra |
Create list of 'MassSpectrum' objects |
redResolution |
Reduce resolution of 'MassSpectrum' objects |
screenSpectra |
Identification of potentially low-quality raw mass spectra |
snrPeaks |
Extract signal-to-noise ratio thresholds from 'MassPeaks' objects |
spectra |
Example mass spectra profiles |
summary.scSpectra |
Numerical summary of 'screenSpectra' objects |
summaryPeaks |
Summary of mass peak profiles |
summarySpectra |
Summary of mass spectra |
transfIntensity |
Transform intensity of 'MassSpectrum' objects |
type |
Example mass spectra metadata |
wavSmoothing |
Discrete wavelet transformation for 'MassSpectrum' objects |
writeIntensity |
Write intensity matrix in different formats |
writeMetadata |
Write metadata in different formats |