Soil Database Interface
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Documentation for package ‘soilDB’ version 2.8.3
Help Pages
C D E F G I K L M N O P R S T U W
| soilDB-package | Soil Database Interface |
-- C --
| code | Convert coded values returned from NASIS and SDA queries into human-readable values |
| createSSURGO | Create a database from SSURGO Exports |
| createStaticNASIS | Create a memory or file-based instance of NASIS database |
-- D --
| dbConnectNASIS | Create local NASIS database connection |
| dbQueryNASIS | Query a NASIS DBIConnection |
| downloadSSURGO | Get SSURGO ZIP files from Web Soil Survey 'Download Soils Data' |
-- E --
| estimateColorMixture | Estimate color mixtures using weighted average of CIELAB color coordinates |
| estimateSTR | Estimate Soil Temperature Regime |
-- F --
| fetchGDB | Get a SoilProfileCollection from a SSURGO file geodatabase |
| fetchHenry | Get data from Henry Mount Soil Temperature and Water Database |
| fetchKSSL | Get Kellogg Soil Survey Laboratory Data from SoilWeb snapshot |
| fetchLDM | Query data from Kellogg Soil Survey Laboratory Data Mart via Soil Data Access or local SQLite snapshot |
| fetchNASIS | Get a pedon or component data 'SoilProfileCollection' from NASIS |
| fetchNASISLabData | Get NCSS Pedon laboratory data from NASIS |
| fetchNASISWebReport | Get component tables from NASIS Web Reports |
| fetchOSD | Get Official Series Descriptions and summaries from SoilWeb API |
| fetchPedonPC | Get a SoilProfileCollection from a PedonPC v.5 database |
| fetchRaCA | Get Rapid Carbon Assessment (RaCA) data |
| fetchSCAN | Get Daily Climate Data from USDA-NRCS SCAN (Soil Climate Analysis Network) Stations |
| fetchSDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| fetchSDA_spatial | Get Spatial Data from Soil Data Access by 'mukey', 'nationalmusym' or 'areasymbol' |
| fetchSoilGrids | Get SoilGrids 2.0 Property Estimates for Points or Spatial Extent |
| fetchSRI | Fetch Soil Inventory Resource (SRI) for USFS Region 6 |
| fetchVegdata | Get vegetation plot data from local NASIS database |
| filter_geochem | Filter KSSL Geochemical Table |
| format_SQL_in_statement | Format vector of values into a string suitable for an SQL 'IN' statement. |
-- G --
| getHzErrorsNASIS | Get Logic Errors in NASIS/PedonPC Pedon Horizon |
| getHzErrorsPedonPC | Get a SoilProfileCollection from a PedonPC v.5 database |
| get_chorizon_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_chorizon_from_SDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| get_cointerp_from_SDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| get_colors_from_NASIS_db | Get Soil Color Data from a local NASIS Database |
| get_colors_from_pedon_db | Get Soil Color Data from a PedonPC Database |
| get_comonth_from_NASIS_db | Get component month data from a local NASIS Database |
| get_competing_soilseries_from_NASIS | Get records from the Series Classification (SC) database |
| get_component_cogeomorph_data_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_cogeomorph_data_from_NASIS_db2 | Get component data from a local NASIS Database |
| get_component_copm_data_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_correlation_data_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_data_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_diaghz_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_esd_data_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_from_GDB | Get a SoilProfileCollection from a SSURGO file geodatabase |
| get_component_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_component_from_SDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| get_component_horizon_data_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_otherveg_data_from_NASIS_db | Get component data from a local NASIS Database |
| get_component_restrictions_from_NASIS_db | Get component data from a local NASIS Database |
| get_concentrations_from_NASIS_db | Get a pedon or component data 'SoilProfileCollection' from NASIS |
| get_copedon_from_NASIS_db | Get component data from a local NASIS Database |
| get_cosoilmoist_from_NASIS | Get the Component Soil Moisture Tables |
| get_cosoilmoist_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_cosoilmoist_from_SDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| get_cotext_from_NASIS_db | Get text note data from a local NASIS Database |
| get_ecosite_history_from_NASIS_db | Get Site Ecological Site History |
| get_EDIT_ecoclass_by_geoUnit | Get Ecological Dynamics Information Tool (EDIT) ecological sites by catalog (ESD/ESG) and MLRA |
| get_extended_data_from_NASIS_db | Get accessory tables and summaries from a local NASIS Database |
| get_extended_data_from_pedon_db | Get accessory tables and summaries from a local pedonPC Database |
| get_hz_data_from_NASIS_db | Get Horizon Data from a local NASIS Database |
| get_hz_data_from_pedon_db | Get Horizon Data from a PedonPC Database |
| get_lablayer_data_from_NASIS_db | Get lab pedon layer data from a local NASIS Database |
| get_labpedon_data_from_NASIS_db | Get lab pedon data from a local NASIS Database |
| get_legend_from_GDB | Get a SoilProfileCollection from a SSURGO file geodatabase |
| get_legend_from_NASIS | Get Legend, Mapunit and Legend Mapunit Area Overlap Tables |
| get_legend_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_legend_from_SDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| get_lmuaoverlap_from_NASIS | Get Legend, Mapunit and Legend Mapunit Area Overlap Tables |
| get_lmuaoverlap_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_lmuaoverlap_from_SDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| get_mapunit_from_GDB | Get a SoilProfileCollection from a SSURGO file geodatabase |
| get_mapunit_from_NASIS | Get Legend, Mapunit and Legend Mapunit Area Overlap Tables |
| get_mapunit_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_mapunit_from_SDA | Get SSURGO/STATSGO2 Mapunit Data from Soil Data Access |
| get_mutext_from_NASIS_db | Get text note data from a local NASIS Database |
| get_NASIS_column_metadata | Get NASIS Metadata (Domain, Column and Choice Lists) |
| get_NASIS_fkey_by_name | Get a NASIS table key by type and table name |
| get_NASIS_metadata | Get NASIS Metadata (Domain, Column and Choice Lists) |
| get_NASIS_pkeyref_by_name | Get a NASIS table key by type and table name |
| get_NASIS_pkey_by_name | Get a NASIS table key by type and table name |
| get_NASIS_table_key_by_name | Get a NASIS table key by type and table name |
| get_NASIS_table_metadata | Get NASIS Table Metadata (Table and Column Descriptions) |
| get_NASIS_table_name_by_purpose | Get NASIS 7 Physical Table Names |
| get_NOAA_GHCND | Get Global Historical Climatology Network Daily (GHCND) data from NOAA API |
| get_NOAA_stations_nearXY | Get NOAA station data near a given latitude and longitude |
| get_OSD | Get Official Series Description Data from JSON, HTML or TXT sources |
| get_OSD_JSON | Get Official Series Description Data from JSON, HTML or TXT sources |
| get_phfmp_from_NASIS_db | Get a pedon or component data 'SoilProfileCollection' from NASIS |
| get_phorizon_from_NASIS_db | Get a pedon or component data 'SoilProfileCollection' from NASIS |
| get_progress_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_projectmapunit2_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_projectmapunit_from_NASIS | Get Legend, Mapunit and Legend Mapunit Area Overlap Tables |
| get_projectmapunit_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_project_correlation_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_project_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_RMF_from_NASIS_db | Get RMF data from local NASIS |
| get_SDA_coecoclass | Get mapunit ecological sites from Soil Data Access |
| get_SDA_cosurfmorph | Get Geomorphic/Surface Morphometry Data from Soil Data Access |
| get_SDA_hydric | Get map unit hydric soils information from Soil Data Access |
| get_SDA_interpretation | Get map unit interpretations from Soil Data Access by rule name |
| get_SDA_metrics | Get Soil Data Access, Lab Data Mart and Web Soil Survey Usage Metrics |
| get_SDA_muaggatt | Get map unit aggregate attribute information from Soil Data Access |
| get_SDA_pmgroupname | Get map unit parent material group information from Soil Data Access |
| get_SDA_property | Get map unit properties from Soil Data Access |
| get_SDV_legend_elements | Get Soil Data Viewer Attribute Information |
| get_sitesoilmoist_from_NASISWebReport | Get component tables from NASIS Web Reports |
| get_site_data_from_NASIS_db | Get Site Data from a local NASIS Database |
| get_site_data_from_pedon_db | Get Site Data from a PedonPC Database |
| get_soilDB_env | Get the soilDB environment used for storing error messages and quality control output |
| get_soilseries_from_NASIS | Get records from the Series Classification (SC) database |
| get_soilseries_from_NASISWebReport | Get records from the Series Classification (SC) database |
| get_SRI | Get Soil Inventory Resource (SRI) for USFS Region 6 |
| get_SRI_layers | Get SRI Layers |
| get_text_notes_from_NASIS_db | Get text note data from a local NASIS Database |
| get_vegplot_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_location_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_prodquadrats_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_speciesbasalarea_from_NASIS | Get vegetation plot data from local NASIS database |
| get_vegplot_species_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_textnote_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_transect_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_transpecies_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_transpoints_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_tree_si_details_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_tree_si_summary_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_vegplot_trhi_from_NASIS_db | Get vegetation plot data from local NASIS database |
| get_veg_data_from_NASIS_db | Get vegetation data from a local NASIS Database |
| get_veg_from_AK_Site | Get Vegetation Data from an AK Site Database |
| get_veg_from_MT_veg_db | Get Site and Plot-level Data from a Montana RangeDB database |
| get_veg_from_NPS_PLOTS_db | Get Vegetation Data from an NPS PLOTS Database |
| get_veg_other_from_MT_veg_db | Get cover composition data from a Montana RangeDB database |
| get_veg_species_from_MT_veg_db | Get species-level Data from a Montana RangeDB database |
| gopheridge | Example 'SoilProfilecollection' Objects Returned by 'fetchNASIS'. |
-- I --
| ISSR800.wcs | Get 800m gridded soil properties from SoilWeb ISSR-800 Web Coverage Service (WCS) |
-- K --
| KSSL_VG_model | Develop a Water Retention Curve from KSSL Data |
-- L --
| loafercreek | Example 'SoilProfilecollection' Objects Returned by 'fetchNASIS'. |
| local_NASIS_defined | Check for presence of 'nasis_local' ODBC data source |
-- M --
| makeChunks | Generate chunk labels for splitting data |
| make_EDIT_service_URL | Make Ecological Dynamics Interpretive Tool (EDIT) web services URL |
| metadata | NASIS 7 Metadata |
| mineralKing | Example 'SoilProfilecollection' Objects Returned by 'fetchNASIS'. |
| month2season | Get data from Henry Mount Soil Temperature and Water Database |
| mukey.wcs | Get Map Unit Key ('mukey') grid from SoilWeb Web Coverage Service (WCS) |
-- N --
| NASIS | Create local NASIS database connection |
| NASISChoiceList | Work with NASIS Choice Lists |
| NASISDomainsAsFactor | Get/Set Options for Encoding NASIS Domains as Factors |
| NASIS_table_column_keys | NASIS 7 Tables, Columns and Foreign Keys |
-- O --
| OSDquery | Search full text of Official Series Description on SoilWeb |
-- P --
| parseWebReport | Parse contents of a web report, based on supplied arguments. |
| processSDA_WKT | Post-process Well-Known Text from Soil Data Access |
-- R --
| ROSETTA | Query USDA-ARS ROSETTA Model API |
-- S --
| SCAN_sensor_metadata | Get Daily Climate Data from USDA-NRCS SCAN (Soil Climate Analysis Network) Stations |
| SCAN_site_metadata | Get Daily Climate Data from USDA-NRCS SCAN (Soil Climate Analysis Network) Stations |
| SCAN_SNOTEL_metadata | Get SCAN and SNOTEL Station Metadata |
| SDA_query | Query Soil Data Access |
| SDA_spatialQuery | Query Soil Data Access by spatial intersection with supplied geometry |
| seriesExtent | Retrieve Soil Series Extent Maps from SoilWeb |
| siblings | Get "siblings" and "cousins" for a given soil series |
| simplifyArtifactData | Simplify Coarse Fraction Data |
| simplifyColorData | Simplify Color Data by ID |
| simplifyFragmentData | Simplify Coarse Fraction Data |
| soilColor.wcs | Get 30m or 270m gridded soil soil color data from SoilWeb Web Coverage Service (WCS) |
| soilDB | Soil Database Interface |
| soilDB.env | Get the soilDB environment used for storing error messages and quality control output |
| SoilWeb_spatial_query | Get SSURGO Data via Spatial Query |
| state_FIPS_codes | Get SCAN and SNOTEL Station Metadata |
| STRplot | Graphical Description of US Soil Taxonomy Soil Temperature Regimes |
| summarizeSoilTemperature | Get data from Henry Mount Soil Temperature and Water Database |
-- T --
| taxaExtent | Get SoilWeb 800m Major Component Soil Taxonomy Grids |
-- U --
| uncode | Convert coded values returned from NASIS and SDA queries into human-readable values |
| us_ss_timeline | Timeline of US Published Soil Surveys |
-- W --
| waterDayYear | Compute Water Day and Year |
| WCS_details | Web Coverage Services Details |