Vertical and Horizontal Inheritance Consistence Analysis

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Documentation for package ‘vhica’ version 0.2.8

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vhica-package Vertical and Horizontal Inheritance Consistence Analysis
CUB Computes the Codon Usage Bias of DNA sequences
div Computation of the synonymous divergence between sequences
image.vhica Consistency matrix for a transposable element in the VHICA analysis.
plot.vhica Plots a VHICA regression between two species.
read.vhica Reads divergence and codon usage data files for the VHICA method.
summary.vhicaimage Provides a data.frame that nicely displays the information returned by 'image.vhica'.
vhica Vertical and Horizontal Inheritance Consistence Analysis