Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present

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Documentation for package ‘allelematch’ version 2.5.4

• DESCRIPTION file.

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allelematch-package	Identification of unique multilocus genotypes
allelematch	Identification of unique multilocus genotypes
allelematch-tutorial	Identification of unique multilocus genotypes
amAlleleFreq	Determine allele frequencies
amCluster	Clustering of multilocus genotypes
amCSSForHTML	Produce cascading style sheet (CSS) for HTML
amCSV.amCluster	Clustering of multilocus genotypes
amCSV.amPairwise	Pairwise matching of multilocus genotypes
amCSV.amUnique	Identification of unique genotypes
amDataset	Prepare a dataset for use with allelematch
amExample1	Data sets to support the tutorials in the supplementary documentation and examples in the manual
amExample2	Data sets to support the tutorials in the supplementary documentation and examples in the manual
amExample3	Data sets to support the tutorials in the supplementary documentation and examples in the manual
amExample4	Data sets to support the tutorials in the supplementary documentation and examples in the manual
amExample5	Data sets to support the tutorials in the supplementary documentation and examples in the manual
amExampleData	Data sets to support the tutorials in the supplementary documentation and examples in the manual
amHTML.amCluster	Clustering of multilocus genotypes
amHTML.amPairwise	Pairwise matching of multilocus genotypes
amHTML.amUnique	Identification of unique genotypes
amMatrix	Produce a dissimilarity matrix for pairs of multilocus genotypes
amPairwise	Pairwise matching of multilocus genotypes
amUnique	Identification of unique genotypes
amUniqueProfile	Determine optimal parameter values for the identification of unique genotypes
print.amAlleleFreq	Determine allele frequencies
print.amDataset	Prepare a dataset for use with allelematch
summary.amCluster	Clustering of multilocus genotypes
summary.amPairwise	Pairwise matching of multilocus genotypes
summary.amUnique	Identification of unique genotypes