Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present


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Documentation for package ‘allelematch’ version 2.5.1

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allelematch-package Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present
allelematch Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present
allelematch-tutorial Identifying Unique Multilocus Genotypes where Genotyping Error and Missing Data may be Present
amAlleleFreq Determine allele frequencies
amCluster Clustering of multilocus genotypes
amCSSForHTML Produce cascading style sheet (CSS) for HTML
amCSV.amCluster Clustering of multilocus genotypes
amCSV.amPairwise Pairwise matching of multilocus genotypes
amCSV.amUnique Identification of unique genotypes
amDataset Prepare a dataset for use with allelematch
amExample1 Data sets to support the tutorials in the supplementary documentation and examples in the manual.
amExample2 Data sets to support the tutorials in the supplementary documentation and examples in the manual.
amExample3 Data sets to support the tutorials in the supplementary documentation and examples in the manual.
amExample4 Data sets to support the tutorials in the supplementary documentation and examples in the manual.
amExample5 Data sets to support the tutorials in the supplementary documentation and examples in the manual.
amExampleData Data sets to support the tutorials in the supplementary documentation and examples in the manual.
amHTML.amCluster Clustering of multilocus genotypes
amHTML.amPairwise Pairwise matching of multilocus genotypes
amHTML.amUnique Identification of unique genotypes
amMatrix Produce a dissimilarity matrix for pairs of multilocus genotypes
amPairwise Pairwise matching of multilocus genotypes
amUnique Identification of unique genotypes
amUniqueProfile Determine optimal parameter values for the identification of unique genotypes
print.amAlleleFreq Determine allele frequencies
print.amDataset Prepare a dataset for use with allelematch
summary.amCluster Clustering of multilocus genotypes
summary.amPairwise Pairwise matching of multilocus genotypes
summary.amUnique Identification of unique genotypes