A |
TF-gene regulation strength matrix |

alpha |
Inverse-gamma distribution hyper-parameter alpha |

A_old |
TF-gene regulation strength matrix sampled from the previous round |

A_sampling |
Regulation Strength Sampling Function |

baseline_sampling |
Gene Baseline Expression Sampling Function |

base_line |
Gene baseline expression |

base_line_old |
Gene baseline expression sampled from the previous round. |

beta |
Inverse-gamma distribution hyper-parameter beta |

BICORN |
BICORN Algorithm Function |

Binding_genes |
Genes in the prior binding network |

Binding_matrix |
Prior TF-gene binding network |

Binding_TFs |
TFs in the prior binding network |

C |
TF-gene binding network |

C_old |
TF-gene binding network sampled from the previous round |

C_prior |
Prior TF-gene binding network |

C_sampling_cluster |
cis-Regulatory Module Sampling Function |

data_integration |
Data Initialization for BICORN |

Exp_data |
Gene expression data |

Exp_genes |
Genes in the expression data |

sigmanoise_sampling |
Fitting Residule Variance Sampling Function |

sigma_A |
Regulation strength variance |

sigma_baseline |
Variance of baseline gene expression. |

sigma_noise |
Variance of gene expression fitting residuals. |

sigma_X |
Transcription factor activity variance |

X |
Transcription factr activity matrix |

X_old |
Transcription factr activity matrix sampled from the previous round |

X_sampling |
Transcription Factor Activity Sampling Function |

Y |
Gene expression data used for module inference |