Proportional Testing for Colocalisation Analysis

Documentation for package ‘colocPropTest’ version 0.9.1

adjust_LD	adjust LD for variable sample size
estprop	Proportional colocalisation testing supplying only a pair of regression coefficients.
estprop_slow	Proportional colocalisation testing
keep_from_S	keep snp subset of coloc dataset
lp	logp
marg_with_V	create variance-covariance matrix for pair of marginal beta + vbeta, given estimate of r between snps
nform	Helper function to adjust LD parameter r for differential sample size between snps
plot_ellipses	draw two ellipses
run_proptests	run proportional tests on extreme subset of snp pairs from two coloc style datasets. Of all functions in this package, this is the main one that should be used.
tag	Derive tag SNPs using heirarchical clustering
tester_marg	run proportional test directly on marginal test stats from coloc datasets