Niche-model-Based Species Identification

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Documentation for package ‘NicheBarcoding’ version 1.0

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

bak.vir	bak.vir data set, a class of matrix.
en.vir	en.vir data set, a class of RasterBrick.
extractSpeInfo	Extraction of taxon/species and distribution information
LappetMoths	LappetMoths data set, a list of 8 data frames.
monophyly.prop	Calculate the proportion of monophyletic group on a tree
NBSI	Niche-model-Based Species Identification (NBSI)
NBSI2	Niche-model-Based Species Identification (NBSI) for a prior analysis
niche.Model.Build	Ecological niche model building using the randomForest classifier
niche.PCA	Principal component analysis of ecological niche among unknown species and the potential species to which they may belong
pseudo.absent.points	Generation of pseudo absent points for niche model building
pseudo.present.points	Generation of pseudo present points for niche model building
spe.mantel.test	Mantel test between interspecific pairwise genetic distance and ecological distance