Model-Based Detection of Disease Clusters


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Documentation for package ‘DClusterm’ version 1.0-1

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brainnav Brain cancer in males in Navarre, Spain, 1988-1994.
brainnavnb Brain cancer in males in Navarre, Spain, 1988-1994.
brainNM Brain cancer in New Mexico, USA, 1973-1991.
brainNM_clusters Brain cancer in New Mexico, USA, 1973-1991.
brainst Brain cancer in New Mexico, USA, 1973-1991.
CalcStatClusterGivenCenter Calls the function to obtain the cluster with the maximum log-likelihood ratio or minimum DIC of all the clusters with the same center and start and end dates.
CalcStatsAllClusters Obtains the clusters with the maximum log-likelihood ratio or minimum DIC for each center and start and end dates.
computeprob Computes the probability that a model parameter is <=k from inla marginals
CreateGridDClusterm Creates grid over the study area.
DetectClustersModel Detects clusters and computes their significance.
get.allknclusters Extract indices of the areas in the clusters detected
get.stclusters Gets areas in a spatio-temporal cluster
glmAndZIP.iscluster Obtains the cluster with the maximum log-likelihood ratio or minimum DIC of all the clusters with the same center and start and end dates.
knbinary Constructs data frame with clusters in binary format.
losalamos Brain cancer in New Mexico, USA, 1973-1991.
mergeknclusters Merges clusters so that they are identifed as levels of a factor.
Navarre Brain cancer in males in Navarre, Spain, 1988-1994.
nm.cl0 Brain cancer in New Mexico, USA, 1973-1991.
nm.cl1 Brain cancer in New Mexico, USA, 1973-1991.
nm.m0 Brain cancer in New Mexico, USA, 1973-1991.
nm.m1 Brain cancer in New Mexico, USA, 1973-1991.
ny.cl0 Leukemia in an eight-county region of upstate New York, 1978-1982.
ny.cl1 Leukemia in an eight-county region of upstate New York, 1978-1982.
ny.m0 Leukemia in an eight-county region of upstate New York, 1978-1982.
ny.m1 Leukemia in an eight-county region of upstate New York, 1978-1982.
NY8 Leukemia in an eight-county region of upstate New York, 1978-1982.
NY8_clusters Leukemia in an eight-county region of upstate New York, 1978-1982.
SelectStatsAllClustersNoOverlap Removes the overlapping clusters.
SetVbleCluster Constructs a variable that indicates the locations and times that pertain to a cluster.
slimknclusters Remove overlapping clusters
TCE Leukemia in an eight-county region of upstate New York, 1978-1982.