Analysis of Small RNA Expression Changes in Hybrid Plants

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Documentation for package ‘sRNAGenetic’ version 0.1.0

• DESCRIPTION file.

Help Pages

basepreplot	Generate the base frequency plot of miRNA
Countfiliter	Filitering low expressed miRNAs based on count: Countfiliter
F1_miRNA_count	Sequences of miRNAs from one species
F1_miRNA_rpm	Sequences of miRNAs from one species
F1_sRNA_seq	Sequences of sRNAs from one species
genetic	Classification for 12 expression patterns
Get12Bins	Genetic effects analysis: Twelve bins of expression analysis (method2)
GetDAtable	Genetic effects analysis of miRNA: |d/a| (method 1)
lenplot	Generate the sRNA length distribution plot
mirnapredata	Generate the data of miRNA base frequence in each position
miVennData	Species specific expression analysis: miVennData
miVennPlot	Species specific expression analysis: miVennPlot
P1_miRNA_count	Sequences of miRNAs from one species
P1_miRNA_rpm	Sequences of miRNAs from one species
P1_sRNA_seq	Sequences of sRNAs from one species
P2_miRNA_count	Sequences of miRNAs from one species
P2_miRNA_rpm	Sequences of miRNAs from one species
P2_sRNA_seq	Sequences of sRNAs from one species
polyDESeq	Differential expression analysis
Rpmfiliter	Filitering low expressed miRNAs based on RPM: Rpmfiliter
srnapredata	Generate the data of sRNA length distribution