Fast Estimation of Gaussian Mixture Copula Models

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Documentation for package ‘GMCM’ version 1.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

GMCM-package	Fast optimization of Gaussian Mixture Copula Models
as.theta	Coerce a list to a theta object
choose.theta	Heuristically chosen starting value of theta
classify	Classify observations
dmvnormal	Multivariate Gaussian density and simulation
EMAlgorithm	EM algorithm for Gaussian mixture models
fit.full.GMCM	Estimate GMCM parameters of the general model
fit.full.gmcm	Estimate GMCM parameters of the general model
fit.general.GMCM	Estimate GMCM parameters of the general model
fit.general.gmcm	Estimate GMCM parameters of the general model
fit.meta.GMCM	Estimate GMCM parameters of the special model
fit.meta.gmcm	Estimate GMCM parameters of the special model
fit.special.GMCM	Estimate GMCM parameters of the special model
fit.special.gmcm	Estimate GMCM parameters of the special model
freshVsFrozen	Reproducibility between Fresh and Frozen B-cell subtypes
full2meta	Convert between parameter formats
get.IDR	Posterior class probabilities, local, and adjusted IDRs.
get.idr	Posterior class probabilities, local, and adjusted IDRs.
get.prob	Posterior class probabilities, local, and adjusted IDRs.
GMCM	Fast optimization of Gaussian Mixture Copula Models
goodness.of.fit	Goodness of fit for the general GMCM
is.theta	Check if parameters are valid
meta2full	Convert between parameter formats
plot.theta	Plotting method for "theta" objects
print.theta	Print method for theta class
rmvnormal	Multivariate Gaussian density and simulation
rtheta	Get random parameters for the Gaussian mixture (copula) model
runGMCM	Run the GMCM shiny application
SimulateGMCMData	Simulation from Gaussian mixture (copula) models
SimulateGMMData	Simulation from Gaussian mixture (copula) models
summary.theta	Summary method for theta class
u133VsExon	Reproducibility between U133 plus 2 and Exon microarrays
Uhat	Fast ranking function