exData |
Example dataset |
matrices |
Example cluster matrices |
msc.depth |
Check the read depth of assembled minicircles |
msc.heatmap |
Visualization of cluster matrices |
msc.length |
Length of minicircles |
msc.matrix |
Build cluster matrix |
msc.pca |
Prinicple Component Analysis based on MSC |
msc.quality |
Check the quality of the assembly |
msc.richness |
Minicircle Sequence Cluster richness |
msc.seqs |
Retrieve sequences |
msc.similarity |
Minicircle Sequence Classes similarity |
msc.subset |
Specific Minicircle Sequence Classes |
msc.uc |
Cluster Analyses |
preprocess |
Filtering of minicircle sequences |
read.uc |
Read in uc files |
rKOMICS |
Minicircle Sequence Classes (MSC) Analyses |