Minicircle Sequence Classes (MSC) Analyses
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Documentation for package ‘rKOMICS’ version 1.3
Help Pages
| exData | Example dataset |
| matrices | Example cluster matrices |
| msc.depth | Check the read depth of assembled minicircles |
| msc.heatmap | Visualization of cluster matrices |
| msc.length | Length of minicircles |
| msc.matrix | Build cluster matrix |
| msc.pca | Prinicple Component Analysis based on MSC |
| msc.quality | Check the quality of the assembly |
| msc.richness | Minicircle Sequence Cluster richness |
| msc.seqs | Retrieve sequences |
| msc.similarity | Minicircle Sequence Classes similarity |
| msc.subset | Specific Minicircle Sequence Classes |
| msc.uc | Cluster Analyses |
| preprocess | Filtering of minicircle sequences |
| read.uc | Read in uc files |
| rKOMICS | Minicircle Sequence Classes (MSC) Analyses |