Geometric Morphometric Methods and Virtual Anthropology Tools
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Documentation for package ‘Arothron’ version 2.0.5
Help Pages
| Arothron-package | eometric Morphometric Methods and Virtual Anthropology Tools |
| Altapic | example dataset |
| aro.clo.points | aro.clo.points |
| Arothron | eometric Morphometric Methods and Virtual Anthropology Tools |
| arraytolist | arraytolist |
| bary.mesh | bary.mesh |
| compare_check.set | compare_check.set |
| CScorreffect | CScorreffect Plot showing the correlation in the shape space between original and combined dataset omitting or including the normalization factors calculated with Arothron and MLECScorrection |
| dec.curve | dec.curve |
| DM_base_sur | example dataset |
| DM_face_sur | example dataset |
| DM_set | example dataset |
| dta | dta |
| endomaker | endomaker |
| endomaker_dir | endomaker_dir |
| endo_set | example dataset |
| export_amira | export_amira |
| export_amira.path | export_amira.path |
| ext.int.mesh | ext.int.mesh |
| ext.mesh.rai | ext.mesh.rai |
| femsets | example dataset |
| grid_pov | grid_pov |
| human_skull | example dataset |
| image2palettes | image2palettes |
| krd1_tooth | example dataset |
| landmark_frm2amira | landmark_frm2amira |
| listtoarray | listtoarray convert a list into an array |
| localmeshdiff | localmeshdiff Calculate and Visualize local differences between two meshes |
| Lset2D_list | example dataset |
| Lset3D_array | example dataset |
| malleus_bone | example dataset |
| MAs_sets | example dataset |
| MLECScorrection | MLECScorrection Maximum Likelihood Estimation of the normalization factor to be applied to optimize the correlation between two landmark configurations to be combined by using twodviews and |
| noise.mesh | noise.mesh |
| out.inn.mesh | out.inn.mesh |
| patches_frm2amira | patches_frm2amira |
| PCscoresCorr | PCscoresCorr Perform a correlation test between two matrices of PCscores |
| permutangle | permutangle |
| pov_selecter | pov_selecter |
| primendoR | example dataset |
| read.amira.dir | read.amira.dir |
| read.amira.set | read.amira.set |
| read.path.amira | read.path.amira |
| repmat | repmat |
| RMs_sets | example dataset |
| SCP1.mesh | example dataset |
| sinus_set | example dataset |
| SM_set | example dataset |
| spherical.flipping | spherical.flipping |
| trasf.mesh | trasf.mesh |
| twodvarshape | twodvarshape Calculates the shape variation associated to a value of PC scores associated to a specific combined landmark configuration or view |
| twodviews | twodviews Combine and calculate the PCscores matrix from a list of different landmark configurations to be combined |
| volendo | volendo |
| yoda_set | example dataset |
| yoda_sur | example dataset |