BinMatInput_ordination |
Example input data containing a consolidated binary matrix with grouping information |

BinMatInput_reps |
Example input data containing a binary matrix comprising replicate sample pairs |

check.data |
Checks binary matrix for unwanted characters. |

consolidate |
Consolidates replicate pairs in a binary matrix. |

errors |
Calculates Jaccard and Euclidean error rates. |

group.names |
Outputs group names specified in the input file for the creation of an nMDS plot. |

nmds |
Creates a non-metric multidimensional scaling plot (nMDS). |

peak.remove |
Removes samples with peaks equal to or less than a specified threshold value. |

peaks.consolidated |
Calculates peak numbers for a consolidated data set (total, maximum, and minimum). |

peaks.original |
Calculates peak numbers for the data set with all replicates (total, maximum, and minimum). |

scree |
Draws a scree plot. |

shepard |
Creates a shepard plot. |

upgma |
Draws a hierarchical clustering tree (UPGMA). |