Comparative and Population Genetic Analyses
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Documentation for package ‘evobiR’ version 1.1
Help Pages
| evobiR-package | evobiR: Evolutionary Biology in R |
| 1.fasta | simulated SNP data |
| 2.fasta | simulated SNP data |
| 3.fasta | simulated SNP data |
| AICc | Computes an AICc score |
| AncCond | Calculate the mean of a continuous character at the origin of derived state of a binary charachter |
| CalcD | Calculate Patterson's D-statistic |
| CalcPopD | Calculate Patterson's D-statistic |
| Even | Tests whether a number is even |
| evobiR | evobiR: Evolutionary Biology in R |
| FuzzyMatch | Find Close Matches in a tree and dataset |
| horn.beetle.csv | Gnatocerus measurements |
| hym.tree | Phylogenetic tree |
| mcmc2 | mcmc log file |
| mcmc3 | mcmc log file |
| mite.trait | phenotype data for mites |
| Mode | Calcualtes the mode of a numeric vector |
| PPSDiscrete | Create Simulated Datasets via PPS |
| ReorderData | Reorders trait data to match the order of tips in a tree |
| ResSel | Selection on Residuals |
| SampleTrees | Select a random sample of trees |
| SlidingWindow | Sliding window analysis |
| SuperMatrix | creates a supermatrix from multiple gene alignments |
| trees | 10 Phylogenetic trees |
| trees.mite | 10 Phylogenetic trees |
| trees.nex | 100 Phylogenetic trees |
| ViewEvo | Learning Resources |
| WinCalcD | Calculate Patterson's D-statistic in sliding windows |