AgeDepth | age depth curve Compute the age-depth curve from the output of mcmc algorithm of ages and the known depth of each dated samples. |

allen_analyze | Analyze composite relations |

allen_basic_relation_set | The basic Allen relation set |

allen_basic_relation_strings | Allen basic relation set as strings |

allen_composition | Composition of two Allen relations |

allen_concurrent_relations | Allen concurrent relation set |

allen_create_concurrent_vector | Create a result vector identifying concurrent relations |

allen_create_distinct_endpoint_vector | Create a result vector for relations with distinct endpoints |

allen_create_result_vector | Create a named result vector |

allen_ensure_set_vector | Ensure an Allen set is represented as a vector of single character strings |

allen_illustrate | Illustrate basic and composite relations |

allen_is_result_vector | Test whether an object is a result vector |

allen_is_set_string | Test if an object is a set string |

allen_is_set_vector | Test if an object is a set vector |

allen_joint_concurrency | Joint concurrence of two or more observed intervals |

allen_lattice_x | Nokel lattice x coordinates |

allen_lattice_y | Nokel lattice y coordinates |

allen_observe | Observe the relation between two phases, each representing an interval of time |

allen_observe_frequency | Observed frequency of an Allen set |

allen_plot | Make a single plot of a NÃ¶kel lattice. |

allen_proportion_result | Calculate the proportion of each relation in a result vector |

allen_relate_intervals | Relate two or more observed intervals |

allen_relation | Allen relation of two definite intervals |

allen_set_to_vector | Convert an Allen relation set to a named vector |

allen_six_value_set | Allen relation set for intervals with distinct endpoints. |

allen_string_to_set | Convert a string containing Allen relation codes to a relation set |

allen_string_to_vector | Convert a string containing Allen relation codes to a result vector |

allen_union | Union of two Allen relation sets. |

allen_update_result | Update a result vector |

analyze_allen_relations | Data for an analytic graphic |

app_ArchaeoPhases | Run ArchaeoPhases shiny apps |

ArchaeoPhases | ArchaeoPhases: Post-Processing of the Markov Chain Simulated by 'Chronomodel', 'OxCal', or 'BCal'. |

coda.mcmc | Create an 'mcmc.list' object for 'coda' users |

composition_lookup_table | Construct an Allen composition lookup table |

CreateMinMaxGroup | Construct the minimum and maximum for a group of events (phase) |

CredibleInterval | Bayesian credible interval |

credible_interval | Bayesian credible interval |

DatesHiatus | Test for the existence of a hiatus between two parameters |

dates_hiatus | Test for the existence of a hiatus between two MCMC chains. |

estimate_range | Estimate ranges from two or more calibrations |

Events | Events |

illustrate_allen_relations | Data for an illustrative graphic |

ImportCSV | Importing a CSV file |

ImportCSV.BCal | Importing a BCal csv file |

is.url | Check if string is a URL |

MarginalPlot | Plot a marginal posterior density |

MarginalProba | Bayesian test for anteriority / posteriority between two parameters |

MarginalStatistics | Marginal summary statistics |

marginal_plot | Plot a marginal posterior density |

marginal_statistics | Marginal summary statistics |

MultiCredibleInterval | Bayesian credible interval for a series of dates |

MultiDatesPlot | Plot of credible intervals or HPD regions of a series of events |

MultiHPD | Bayesian HPD regions for a series of MCMC chains |

MultiMarginalPlot | Marginal posterior densities of several events |

MultiPhasePlot | Several phase density plots |

MultiPhasesGap | Gap or hiatus between a succession of groups (for groups in temporal order constraint) |

MultiPhasesTransition | Transition range for a succession of groups (for groups in temporal order constraint) |

MultiPhaseTimeRange | Phase time range for multiple groups |

MultiSuccessionPlot | Successive Phases Density Plots (for phases in temporal order constraint) |

multi_credible_interval | Bayesian credible interval for a series of dates |

multi_dates_plot | Plot of credible intervals or HPD regions of a series of events |

multi_hpd | Bayesian HPD regions for a series of MCMC chains |

multi_marginal_plot | Marginal posterior densities of several events |

multi_marginal_statistics | Marginal summary statistics for multiple MCMC chains |

new_archaeophases_mcmc | Constructor for 'archaeophases_mcmc' object |

new_archaeophases_plot | Constructor for 'archaeophases_plot' object |

OccurrencePlot | Plot occurrences |

occurrence_plot | Plot occurrences |

original_file | Check for an original mcmc file |

original_file.archaeophases_mcmc | Check for an original mcmc file |

original_file.archaeophases_plot | Check for an original 'archaeophases_plot' file |

oxc | oxc |

PhaseDurationPlot | Plot the duration of a group |

PhasePlot | Plot the characteristics of a group of events |

Phases | Phases |

PhasesGap | Gap or hiatus between two successive phases (for phases in temporal order constraint) |

PhaseStatistics | Summary statistics of a phase |

PhasesTransition | Transition range between two successive phases (for phases in temporal order constraint) |

phases_gap | Gap or hiatus between two successive phases (for phases in temporal order constraint) |

PhaseTimeRange | Phase time range |

phase_statistics | Summary statistics of a phase |

plot.archaeophases_plot | Recreate a graphical plot |

read_bcal | Read MCMC output from BCal |

read_chronomodel | Read MCMC output from ChronoModel |

read_oxcal | Read MCMC output from OxCal |

reproduce | Reproduce an MCMC data frame |

reproduce.archaeophases_mcmc | Reproduce an MCMC data frame |

reproduce.archaeophases_plot | Reproduce an ArchaeoPhases plot |

SuccessionPlot | Density plots of two successive groups (for groups in temporal order constraint) |

TempoActivityPlot | Plot the derivative of the tempo plot Bayesian estimate |

TempoPlot | Tempo plot |

tempo_activity_plot | Plot the derivative of the tempo plot Bayesian estimate |

tempo_plot | Tempo plot |

undated_sample | Predictive distribution of date |

valid_url | Check if a resource can be located |