# Post-Processing of the Markov Chain Simulated by 'ChronoModel', 'Oxcal' or 'BCal' ## Help Pages

 AgeDepth age depth curve Compute the age-depth curve from the output of mcmc algorithm of ages and the known depth of each dated samples. allen_analyze Analyze composite relations allen_basic_relation_set The basic Allen relation set allen_basic_relation_strings Allen basic relation set as strings allen_composition Composition of two Allen relations allen_concurrent_relations Allen concurrent relation set allen_create_concurrent_vector Create a result vector identifying concurrent relations allen_create_distinct_endpoint_vector Create a result vector for relations with distinct endpoints allen_create_result_vector Create a named result vector allen_ensure_set_vector Ensure an Allen set is represented as a vector of single character strings allen_illustrate Illustrate basic and composite relations allen_is_result_vector Test whether an object is a result vector allen_is_set_string Test if an object is a set string allen_is_set_vector Test if an object is a set vector allen_joint_concurrency Joint concurrence of two or more observed intervals allen_lattice_x Nokel lattice x coordinates allen_lattice_y Nokel lattice y coordinates allen_observe Observe the relation between two phases, each representing an interval of time allen_observe_frequency Observed frequency of an Allen set allen_plot Make a single plot of a Nökel lattice. allen_proportion_result Calculate the proportion of each relation in a result vector allen_relate_intervals Relate two or more observed intervals allen_relation Allen relation of two definite intervals allen_set_to_vector Convert an Allen relation set to a named vector allen_six_value_set Allen relation set for intervals with distinct endpoints. allen_string_to_set Convert a string containing Allen relation codes to a relation set allen_string_to_vector Convert a string containing Allen relation codes to a result vector allen_union Union of two Allen relation sets. allen_update_result Update a result vector analyze_allen_relations Data for an analytic graphic app_ArchaeoPhases Run ArchaeoPhases shiny apps ArchaeoPhases ArchaeoPhases: Post-Processing of the Markov Chain Simulated by 'Chronomodel', 'OxCal', or 'BCal'. coda.mcmc Create an 'mcmc.list' object for 'coda' users composition_lookup_table Construct an Allen composition lookup table CreateMinMaxGroup Construct the minimum and maximum for a group of events (phase) CredibleInterval Bayesian credible interval credible_interval Bayesian credible interval DatesHiatus Test for the existence of a hiatus between two parameters dates_hiatus Test for the existence of a hiatus between two MCMC chains. estimate_range Estimate ranges from two or more calibrations Events Events illustrate_allen_relations Data for an illustrative graphic ImportCSV Importing a CSV file ImportCSV.BCal Importing a BCal csv file is.url Check if string is a URL MarginalPlot Plot a marginal posterior density MarginalProba Bayesian test for anteriority / posteriority between two parameters MarginalStatistics Marginal summary statistics marginal_plot Plot a marginal posterior density marginal_statistics Marginal summary statistics MultiCredibleInterval Bayesian credible interval for a series of dates MultiDatesPlot Plot of credible intervals or HPD regions of a series of events MultiHPD Bayesian HPD regions for a series of MCMC chains MultiMarginalPlot Marginal posterior densities of several events MultiPhasePlot Several phase density plots MultiPhasesGap Gap or hiatus between a succession of groups (for groups in temporal order constraint) MultiPhasesTransition Transition range for a succession of groups (for groups in temporal order constraint) MultiPhaseTimeRange Phase time range for multiple groups MultiSuccessionPlot Successive Phases Density Plots (for phases in temporal order constraint) multi_credible_interval Bayesian credible interval for a series of dates multi_dates_plot Plot of credible intervals or HPD regions of a series of events multi_hpd Bayesian HPD regions for a series of MCMC chains multi_marginal_plot Marginal posterior densities of several events multi_marginal_statistics Marginal summary statistics for multiple MCMC chains new_archaeophases_mcmc Constructor for 'archaeophases_mcmc' object new_archaeophases_plot Constructor for 'archaeophases_plot' object OccurrencePlot Plot occurrences occurrence_plot Plot occurrences original_file Check for an original mcmc file original_file.archaeophases_mcmc Check for an original mcmc file original_file.archaeophases_plot Check for an original 'archaeophases_plot' file oxc oxc PhaseDurationPlot Plot the duration of a group PhasePlot Plot the characteristics of a group of events Phases Phases PhasesGap Gap or hiatus between two successive phases (for phases in temporal order constraint) PhaseStatistics Summary statistics of a phase PhasesTransition Transition range between two successive phases (for phases in temporal order constraint) phases_gap Gap or hiatus between two successive phases (for phases in temporal order constraint) PhaseTimeRange Phase time range phase_statistics Summary statistics of a phase plot.archaeophases_plot Recreate a graphical plot read_bcal Read MCMC output from BCal read_chronomodel Read MCMC output from ChronoModel read_oxcal Read MCMC output from OxCal reproduce Reproduce an MCMC data frame reproduce.archaeophases_mcmc Reproduce an MCMC data frame reproduce.archaeophases_plot Reproduce an ArchaeoPhases plot SuccessionPlot Density plots of two successive groups (for groups in temporal order constraint) TempoActivityPlot Plot the derivative of the tempo plot Bayesian estimate TempoPlot Tempo plot tempo_activity_plot Plot the derivative of the tempo plot Bayesian estimate tempo_plot Tempo plot undated_sample Predictive distribution of date valid_url Check if a resource can be located