Post-Processing of Markov Chain Monte Carlo Simulations for
Chronological Modelling
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Documentation for package ‘ArchaeoPhases’ version 2.0
Help Pages
| activity | Activity Plot |
| activity-method | Activity Plot |
| allen_analyze | Analyze Composite Allen Relations |
| allen_complement | Complement of an Allen Relation |
| allen_complement-method | Complement of an Allen Relation |
| allen_composition | Composition of Allen Relations |
| allen_composition-method | Composition of Allen Relations |
| allen_converse | Converse of an Allen Relation |
| allen_converse-method | Converse of an Allen Relation |
| allen_illustrate | Illustrate Basic and Composite Allen Relations |
| allen_intersect | Intersection of Allen Relations |
| allen_intersect-method | Intersection of Allen Relations |
| allen_joint_concurrency | Joint Concurrence of Two or More Observed Intervals |
| allen_joint_concurrency-method | Joint Concurrence of Two or More Observed Intervals |
| allen_observe | Observe the Relation Between two Phases |
| allen_observe-method | Observe the Relation Between two Phases |
| allen_observe_frequency | Observed Frequency of an Allen Set |
| allen_observe_frequency-method | Observed Frequency of an Allen Set |
| allen_relation | Allen Relation Between Definite Intervals |
| allen_relation-method | Allen Relation Between Definite Intervals |
| allen_relation_code | The Basic Allen Relation Set |
| allen_relation_concurrent | The Basic Allen Relation Set |
| allen_relation_distinct | The Basic Allen Relation Set |
| allen_relation_string | The Basic Allen Relation Set |
| allen_union | Union of Allen Relations |
| allen_union-method | Union of Allen Relations |
| as.data.frame-method | Coerce to a Data Frame |
| as_coda | Coerce to Coda |
| as_coda-method | Coerce to Coda |
| as_events | Coerce to Events |
| as_events-method | Coerce to Events |
| as_phases | Coerce to Phases |
| as_phases-method | Coerce to Phases |
| bind | Combine two MCMC Objects |
| boundaries | Phase Time Range |
| boundaries-method | Phase Time Range |
| bury | Age-Depth Modeling |
| bury-method | Age-Depth Modeling |
| cbind2-method | Combine two MCMC Objects |
| check | Check for an Original MCMC File |
| data.frame | Coerce to a Data Frame |
| duration | Phase Duration |
| duration-method | Phase Duration |
| elapse | Elapsed Time Scale |
| elapse-method | Elapsed Time Scale |
| hiatus | Hiatus Between Two Dates |
| hiatus-method | Hiatus Between Two Dates |
| interpolate | Interpolate Between Two Dates |
| interpolate-method | Interpolate Between Two Dates |
| interval_credible | Bayesian Credible Interval |
| interval_credible-method | Bayesian Credible Interval |
| interval_hdr | Bayesian HPD Regions |
| interval_hdr-method | Bayesian HPD Regions |
| is_original | Check for an Original MCMC File |
| is_original-method | Check for an Original MCMC File |
| mcmc_events | Events |
| mcmc_phases | Phases |
| names | The Names of an Object |
| names-method | The Names of an Object |
| names<--method | The Names of an Object |
| occurrence | Occurrence Plot |
| occurrence-method | Occurrence Plot |
| older | Bayesian Test for Anteriority/Posteriority |
| older-method | Bayesian Test for Anteriority/Posteriority |
| phases | Compute Phases |
| phases-method | Compute Phases |
| plot-method | Activity Plot |
| plot-method | Age-Depth Modeling |
| plot-method | Occurrence Plot |
| plot-method | Plot Events |
| plot-method | Plot Phases |
| plot-method | Tempo Plot |
| plot_events | Plot Events |
| plot_phases | Plot Phases |
| predict-method | Age-Depth Modeling |
| read_bcal | Read BCal Output |
| read_bcal-method | Read BCal Output |
| read_chronomodel | Read ChronoModel Output |
| read_chronomodel-method | Read ChronoModel Output |
| read_chronomodel_events | Read ChronoModel Output |
| read_chronomodel_events-method | Read ChronoModel Output |
| read_chronomodel_phases | Read ChronoModel Output |
| read_chronomodel_phases-method | Read ChronoModel Output |
| read_oxcal | Read OxCal Output |
| read_oxcal-method | Read OxCal Output |
| sensitivity | Sensitivity |
| sensitivity-method | Sensitivity |
| sort | Sort an MCMC Object |
| sort-method | Sort an MCMC Object |
| sort.list | Ordering Permutation of an MCMC Object |
| sort.list-method | Ordering Permutation of an MCMC Object |
| subset | Extract or Replace Parts of an Object |
| summary | Marginal Summary Statistics for Multiple MCMC Chains |
| summary-method | Marginal Summary Statistics for Multiple MCMC Chains |
| tempo | Tempo Plot |
| tempo-method | Tempo Plot |
| transition | Transition Range Between Successive Phases |
| transition-method | Transition Range Between Successive Phases |
| [-method | Extract or Replace Parts of an Object |