app_ArchaeoPhases | Run ArchaeoPhases shiny apps |

ArchaeoPhases | ArchaeoPhases: Post-Processing of the Markov Chain Simulated by 'Chronomodel', 'OxCal', or 'BCal'. |

coda.mcmc | Create an 'mcmc.list' object for 'coda' users |

CreateMinMaxGroup | Construct the minimum and maximum for a group of events (phase) |

CredibleInterval | Bayesian credible interval |

credible_interval | Bayesian credible interval |

DatesHiatus | Test for the existence of a hiatus between two parameters |

dates_hiatus | Test for the existence of a hiatus between two MCMC chains. |

estimate_range | Estimate ranges from two or more calibrations |

Events | Events |

ImportCSV | Importing a CSV file |

ImportCSV.BCal | Importing a BCal csv file |

MarginalPlot | Plot a marginal posterior density |

MarginalProba | Bayesian test for anteriority / posteriority between two parameters |

MarginalStatistics | Marginal summary statistics |

marginal_plot | Plot a marginal posterior density |

marginal_statistics | Marginal summary statistics |

MultiCredibleInterval | Bayesian credible interval for a series of dates |

MultiDatesPlot | Plot of credible intervals or HPD regions of a series of events |

MultiHPD | Bayesian HPD regions for a series of MCMC chains |

MultiMarginalPlot | Marginal posterior densities of several events |

MultiPhasePlot | Several phase density plots |

MultiPhasesGap | Gap or hiatus between a succession of groups (for groups in temporal order constraint) |

MultiPhasesTransition | Transition range for a succession of groups (for groups in temporal order constraint) |

MultiPhaseTimeRange | Phase time range for multiple groups |

MultiSuccessionPlot | Successive Phases Density Plots (for phases in temporal order constraint) |

multi_credible_interval | Bayesian credible interval for a series of dates |

multi_dates_plot | Plot of credible intervals or HPD regions of a series of events |

multi_hpd | Bayesian HPD regions for a series of MCMC chains |

multi_marginal_plot | Marginal posterior densities of several events |

multi_marginal_statistics | Marginal summary statistics for multiple MCMC chains |

new_archaeophases_mcmc | Constructor for 'archaeophases_mcmc' object |

new_archaeophases_plot | Constructor for 'archaeophases_plot' object |

OccurrencePlot | Plot occurrences |

occurrence_plot | Plot occurrences |

original_file | Check for an original mcmc file |

original_file.archaeophases_mcmc | Check for an original mcmc file |

original_file.archaeophases_plot | Check for an original 'archaeophases_plot' file |

PhaseDurationPlot | Plot the duration of a group |

PhasePlot | Plot the characteristics of a group of events |

Phases | Phases |

PhasesGap | Gap or hiatus between two successive phases (for phases in temporal order constraint) |

PhaseStatistics | Summary statistics of a phase |

PhasesTransition | Transition range between two successive phases (for phases in temporal order constraint) |

phases_gap | Gap or hiatus between two successive phases (for phases in temporal order constraint) |

PhaseTimeRange | Phase time range |

phase_statistics | Summary statistics of a phase |

plot.archaeophases_plot | Recreate a graphical plot |

read_bcal | Read MCMC output from BCal |

read_chronomodel | Read MCMC output from ChronoModel |

read_oxcal | Read MCMC output from OxCal |

reproduce.archaeophases_mcmc | Reproduce an MCMC data frame |

reproduce.archaeophases_plot | Reproduce an ArchaeoPhases plot |

SuccessionPlot | Density plots of two successive groups (for groups in temporal order constraint) |

TempoActivityPlot | Plot the derivative of the tempo plot Bayesian estimate |

TempoPlot | Tempo plot |

tempo_activity_plot | Plot the derivative of the tempo plot Bayesian estimate |

tempo_plot | Tempo plot |