Easy Study of Patient DICOM Data in Oncology

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Documentation for package ‘espadon’ version 1.0.5

Help Pages

add.margin Adding or removing a margin to a volume
bin.closing Binary volume closing
bin.clustering Binary volume clustering
bin.dilation Binary volume dilation
bin.erosion Binary volume erosion
bin.from.roi Creation of a binary volume according to RoI
bin.from.vol Creation of a binary volume according to the voxel values of a volume
bin.intersection Intersection of two binaries
bin.inversion Inversion of a binary
bin.opening Binary volume opening
bin.subtraction Subtraction of two binaries
bin.sum Sum of two binaries
castlow.str Cast of a character string
castup.str Cast of a character string
dicom.browser DICOM raw data browser
dicom.parser Conversion of DICOM raw data into a dataframe or a list of DICOM TAG information
dicom.raw.data.anonymizer DICOM anonymizer
dicom.raw.data.loader DICOM file loading in raw data
dicom.set.tag.value Change TAG value in DICOM raw data
dicom.tag.dictionary DICOM TAG dictionary
dicom.tag.parser DICOM TAG parser
dicom.to.Rdcm.converter Conversion of DICOM object into files that can be interpreted by the 'espadon' package
dicom.viewer DICOM content viewer
display.2D.histo Display of a 2D histogram
display.3D.contour Display the 3D contours of the RoI
display.3D.mesh 3D display of a mesh
display.3D.sections Display 3D sections of a patient
display.3D.stack Display in 3D the selected planes of an 'espadon' class volume
display.DVH Display of a DVH
display.DVH.pc Display of a cumulative DVH in percent of total volume
display.dV_dx Display of the volume density of a histogram
display.histo Display of the counts of a histogram
display.kplane Display of a plane of a volume
display.legend Display of the RoI legend
display.obj.links Display patient objects links
display.palette Display of the color scale of a color palette
display.plane Display the transverse frontal or sagittal view in the patient reference system
espadon.class ESPADON class
get.extreme.pt Coordinates of the extreme points
get.ijk.from.index Conversion of the indices of a point into ijk vector
get.ijk.from.xyz Indices relating to the coordinates of the points
get.line Image value along an axis
get.plane Extracting a plane from a volume
get.rigid.M Transfer matrix between two frames of reference
get.value.from.ijk Value of the volume at a selection of DICOM indices
get.value.from.xyz Voxel values on a selection of points
get.volume.from.bin Volume selected by binary volume
get.volume.from.roi Volume of a region of interest (RoI)
get.xyz.from.index Conversion of the indices of a point, into xyz coordinate vector in the patient's frame of reference
grid.equal Comparison of the grids of two volume objects
histo.2D 2D histograms of 2 volumes
histo.DVH Cumulative Dose Volume Histogram
histo.from.bin Histogram according to a binary
histo.from.roi Histogram according to a RoI
histo.vol Histogram of a volume
load.obj.data Load data of an 'espadon' class object
load.obj.from.dicom Loading an 'espadon' object from DICOM files or folder
load.obj.from.Rdcm Loading an 'espadon' object from *.Rdcm file
load.patient.from.dicom Loading patient data from DICOM files
load.patient.from.Rdcm Loading patient data from *.Rdcm files
load.Rdcm.raw.data Loading a *.Rdcm file
load.T.MAT Loading of information about transfer matrices between frames of reference of patient objects.
mesh.from.bin Creation of a mesh according to a binary volume
mesh.in.new.ref Change of frame of reference of a mesh
mesh.repair Repair of a mesh
mesh.spheric.proj Adding spherical coordinates to a mesh
nesting.cube Restriction of a volume to a rectangular parallelepiped
nesting.roi Restrict volume to RoI
orientation.create Creation of orientation
pal.RVV Conversion of Hounsfied Units to Realistic Volume Vizualization colors
Rdcm.inventory Inventory of 'espadon' objects from Rdcm files
ref.add Adding a frame of reference in T.MAT
ref.cutplane.add Adding volume's cutting planes frame of reference in T.MAT
ref.remove Deletion of a frame of reference in T.MAT
ref.srctodest.add Linking two existing frames of reference in T.MAT
rt.indices.from.bin Dosimetry, volume, conformity, homogeneity indices from binary selection
rt.indices.from.roi Dosimetry, volume, conformity, homogeneity indices from RoI
save.T.MAT Save a T.MAT class object
save.to.Rdcm Save a 'espadon' object in a pre-formatted *.Rdcm file
select.names Regions of Interest (RoI) indices
struct.from.bin Creation of struct class object from a binary volume
struct.in.new.ref Change of frame of reference of a "struct" class object.
struct.merge Merging of structures into a new structure
toy.dicom.raw toy DICOM raw data
toy.load.patient Load a toy patient for test
vector.product Vector product of two vectors
vol.copy Creating a volume from another one
vol.create Volume creating
vol.from.bin Volume class object according to binary selection
vol.gradient Gradient of a volume
vol.in.new.ref Change of frame of reference of a volume
vol.regrid Transform the grid of a volume class object into the grid of another
vol.sum Sum of 2 volumes
xlsx.from.dcm Converting DICOM files to .xlsx files
xlsx.from.Rdcm Converting .Rdcm files to .xlsx files