Marker-Based Cell Type Purification for Single-Cell Sequencing Data

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Documentation for package ‘scGate’ version 1.6.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

combine_scGate_multiclass	Combine scGate annotations
gating_model	Model creation and editing
genes.blacklist.default	Blocklist of genes for dimensionality reduction
get_scGateDB	Load scGate model database
get_testing_data	Download sample data
load_scGate_model	Load a single scGate model
performance.metrics	Performance metrics
plot_levels	Plot scGate filtering results by level
plot_tree	Plot model tree
plot_UCell_scores	Plot UCell scores by level
query.seurat	Toy dataset to test the package
scGate	Filter single-cell data by cell type
test_my_model	Test your model