combine_scGate_multiclass |
Combine scGate annotations |
gating_model |
Model creation and editing |
genes.blacklist.default |
Blocklist of genes for dimensionality reduction |
get_scGateDB |
Load scGate model database |
get_testing_data |
Download sample data |
load_scGate_model |
Load a single scGate model |
performance.metrics |
Performance metrics |
plot_levels |
Plot scGate filtering results by level |
plot_tree |
Plot model tree |
plot_UCell_scores |
Plot UCell scores by level |
query.seurat |
Toy dataset to test the package |
scGate |
Filter single-cell data by cell type |
test_my_model |
Test your model |