Inference of Gene Regulatory Networks

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Documentation for package ‘corto’ version 1.2.4

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

barplot2	barplot2 - Bar plot with upper error bars
corto	Calculate a regulon from a data matrix
fcor	A fast correlation function
fisherp	Fisher integration of p-values
gsea	GSEA
gsea2	2-way GSEA GSEA Gene set enrichment analysis of two complementary gene sets using gsea
kmgformat	kmgformat - Nice Formatting of Numbers
mra	Perform Master Regulator Analysis (mra).
mraplot	Plot a master regulator analysis
p2r	p2r Convert a P-value to the corresponding Correlation Coefficient
p2z	p2z
plot_gsea	Plot GSEA results
plot_gsea2	Plot 2-way GSEA results
r2p	r2p Convert Correlation Coefficient to P-value
scatter	scatter - XY scatter plot with extra information
scinot	scinot - Convert a number to a scientific notation expression
slice	Slice
ssgsea	ssGSEA
stouffer	Stouffer integration of Z scores
textrepel	textrepel - Plot text with non-overlapping labels
val2col	val2col - Convert a numeric vector into colors
wstouffer	Weighted Stouffer integration of Z scores
z2p	z2p