Create and Maintain a Relational Database of Data from PubMed/MEDLINE


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Documentation for package ‘pmparser’ version 1.0.20

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getCitation Get public-domain citation data
getPgParams Get Postgres connection parameters
modifyPubmedDb Create or update a PubMed database
parseAbstract Parse elements from a PubMed XML file
parseArticle Parse elements from a PubMed XML file
parseArticleId Parse elements from a PubMed XML file
parseAuthor Parse elements from a PubMed XML file
parseChemical Parse elements from a PubMed XML file
parseComment Parse elements from a PubMed XML file
parseDataBank Parse elements from a PubMed XML file
parseElement Parse elements from a PubMed XML file
parseGrant Parse elements from a PubMed XML file
parseInvestigator Parse elements from a PubMed XML file
parseJournal Parse elements from a PubMed XML file
parseKeyword Parse elements from a PubMed XML file
parseMesh Parse elements from a PubMed XML file
parseOther Parse elements from a PubMed XML file
parsePmidStatus Parse elements from a PubMed XML file
parsePubHistory Parse elements from a PubMed XML file
parsePubType Parse elements from a PubMed XML file