rdiversity-package |
rdiversity: diversity measurement in R |
as.binary |
as binary digit. |
binAdd |
Binary Addition (+) |
binary |
Binary digit. |
binSeq |
Binary sequence |
byte |
A simple helper function to return the size of one byte |
bytesNeeded |
Minimum number of "byte" needed to hold n "bit" |
chainsaw |
Function to cut the phylogeny to a specified depth from the tip with the greatest distance from the root. |
dist2sim |
Distance to similarity |
distance |
Generate distance object |
distance-class |
distance-class |
distance-method |
Generate distance object |
fillUpToBit |
Fill up to bit (000..) |
fillUpToByte |
Fill up to Byte (00000000..) |
gen2dist |
Genetic distance matrix |
inddiv |
Calculate individual-level diversity |
inddiv-method |
Calculate individual-level diversity |
is.binary |
is Binary Vector |
loadAttributes |
loadAttributes |
metacommunity |
Metacommunity |
metacommunity-class |
metacommunity-class |
metacommunity-method |
Metacommunity |
metadiv |
Metacommunity-level diversity |
metadiv-method |
Metacommunity-level diversity |
meta_gamma |
Metacommunity gamma diversity |
negate |
Binary Negation (!) |
norm_alpha |
Normalised alpha (low level diversity component) |
norm_beta |
Normalised beta (low level diversity component) |
norm_meta_alpha |
Normalised metacommunity alpha diversity |
norm_meta_beta |
Normalised metacommunity beta diversity |
norm_meta_rho |
Normalised metacommunity rho diversity |
norm_rho |
Normalised rho (low level diversity component) |
norm_sub_alpha |
Normalised subcommunity alpha diversity |
norm_sub_beta |
Normalised subcommunity beta diversity |
norm_sub_rho |
Normalised subcommunity rho diversity |
Ops.binary |
Group Generic Ops |
phy2branch |
Phylogenetic similarity |
phy2dist |
Phylogenetic pairwise tip distance matrix |
phy_abundance |
Relative abundance of historical species |
phy_struct |
Calculate phylogenetic structure matrix |
powermean-class |
powermean-class |
power_mean |
Power mean of vector elements |
print.binary |
Print method for binary number. |
raw_alpha |
Raw alpha (low level diversity component) |
raw_beta |
Raw beta (low level diversity component) |
raw_gamma |
Gamma (low level diversity component) |
raw_meta_alpha |
Raw metacommunity alpha diversity |
raw_meta_beta |
Raw metacommunity beta diversity |
raw_meta_rho |
Raw metacommunity rho diversity |
raw_rho |
Raw rho (low level diversity component) |
raw_sub_alpha |
Raw subcommunity alpha diversity |
raw_sub_beta |
Raw subcommunity beta diversity |
raw_sub_rho |
Raw subcommunity rho diversity |
rdiversity |
rdiversity: diversity measurement in R |
relativeentropy-class |
relativeentropy-class |
repartition |
Repartition metacommunity |
saveAttributes |
saveAttributes |
show-method |
distance-class |
show-method |
metacommunity-class |
show-method |
similarity-class |
similarity |
Generate similarity object |
similarity-class |
similarity-class |
similarity-method |
Generate similarity object |
subdiv |
Calculate subcommunity-level diversity |
subdiv-method |
Calculate subcommunity-level diversity |
sub_gamma |
Subcommunity gamma diversity |
summary.binary |
Summary method for binary number. |
switchEndianess |
Switch Endianess. |
tax2dist |
Generate taxonomic distance matrix |