Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets


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Documentation for package ‘bioPN’ version 1.2.0

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bioPN-package Simulation of deterministic and stochastic biochemical reaction networks using Petri Nets
atr Helper functions for model definition
GibsonBruck Simulation of a biochemical system
GillespieDirectCR Simulation of a biochemical system
GillespieDirectGB Simulation of a biochemical system
GillespieOptimDirect Simulation of a biochemical system
HaseltineRawlings Simulation of a biochemical system
init Helper functions for model definition
load.cfn Helper functions for model definition
PartitionedLeaping Simulation of a biochemical system
RungeKuttaDormandPrince45 Simulation of a biochemical system
unload.cfns Helper functions for model definition