Karl Broman's R Code

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Documentation for package ‘broman’ version 0.80

• DESCRIPTION file.
• Package NEWS.

Help Pages

%nin%	Value matching
%win%	Value matching
%wnin%	Value matching
add_commas	Add commas to a large number
align_vectors	Align two vectors
arrowlocator	Use the locator function to plot an arrow
attrnames	Get names of attributes
brocolors	Vectors of colors for figures
bromanversion	Installed version of R/broman
cf	Compare objects, including missing data pattern
cf.default	Compare objects, including missing data pattern
cf.list	Compare objects, including missing data pattern
chisq	Chi-square test by simulation for a two-way table
ciplot	Effect plot with multiple CIs for different groups
colwalpha	Convert a color to use alpha transparency
compare_rows	Compare rows in a matrix
convert2hex	Convert decimal to hex
crayons	Crayon colors
dec2hex	Convert decimal to hex
dotplot	Dot chart with a gray background
excel_fig	Excel-style figure displaying contents of a matrix
exit	exit R without saving
fac2num	Convert a factor to numeric
fisher	Fisher's exact test for a two-way table
get_precision	Determine the precision of a number
grayplot	Scatterplot with a gray background
grayplot_na	Scatterplot with missing values indicated
h	View html version of help file
hex2dec	Convert from hex to decimal
histlines	Utility to create line-based histogram
jiggle	Jiggle points horizontally
karl_theme	Karl's ggplot2 theme
kbdate	My little date facility
lenuniq	Number of unique values
make	Run make within a package directory
manyboxplot	Boxplot-like figure for many groups
maxabs	maximum of absolute value
mypairs	My scatterplot matrix
myround	Round a number, preserving extra 0's
normalize	Quantile normalization
Numbers	Numbers spelled out in English
numbers	Numbers spelled out in English
objectsizes	Calculate sizes of all objects in workspace
openfile	Open a file
paired.perm.test	Paired permutation t-test
paste.	paste with dot separator
paste..	paste with null or dot as separator and with collapse
paste.0	paste with null or dot as separator and with collapse
paste0.	paste with null or dot as separator and with collapse
paste00	paste with null or dot as separator and with collapse
perm.test	Permutation t-test
pick_more_precise	Pick the more precise value for each element in two related vectors
plot_crayons	Illustration of crayon colors
qqline2	qqline for qqplot
qr2	The QR decomposition of a matrix
quantileSE	Sample quantiles and their standard errors
revgray	Create vector of colors from white to black
revrainbow	Create vector of colors from blue to red
rmvn	Simulate multivariate normal
runningmean	Running mean, sum, or median
runningratio	Running ratio
setRNGparallel	Set up random number generation for parallel calculations
simp	Numerical integration
spell_out	Spell out an integer
strwidth2lines	Calculate width of a character string in number of lines
strwidth2xlim	Calculate horizontal limit in user coordinates for adding labels
switchv	Vectorized version of switch
theme_karl	Karl's ggplot2 theme
trap	Numerical integration
triarrow	Plot an arrow within a Holmans triangle
trigrid	Add grid lines to triplot
trilines	Plot lines within a Holmans triangle
triplot	Plot Holmans triangle
tripoints	Plot points within a Holmans triangle
tritext	Plot text within a Holmans triangle
twocolorpal	Create vector of colors from blue to white to red
unsetRNGparallel	Set up random number generation for parallel calculations
vec2string	Turn a vector into a single character string
venn	Plot to-scale Venn diagram
winsorize	Winsorize a vector
xlimlabel	Calulate horizontal limit in user coordinates for adding labels