param_table |
Creates parameter kable |
parse_mlxtran |
Parse MONOLIX mlxtran file |
pk_occ |
Creates pmx controller using monlix data having Occasional variable |
pk_pd |
Creates pkpd pmx controller using package internal data |
plots |
Get plots description |
plot_names |
Get plot names |
plot_pmx |
This is a generic plot method that produces all plots by default described in pmx model evaluation guidance. |
plot_pmx.distrib |
Plot EBE distribution |
plot_pmx.eta_cov |
This plots an ETA covariance matrix which can be used to define the co-relation between the parameters and its shrinkage |
plot_pmx.eta_pairs |
Plot random effect correlation plot |
plot_pmx.individual |
This function can be used to plot individual prediction and compare with observed data and population prediction for each individual separately |
plot_pmx.pmx_dens |
This function plots EBE versus covariates using qq plots |
plot_pmx.pmx_gpar |
The ggPMX base plot function |
plot_pmx.pmx_qq |
This function plot EBE versus covariates using qq plots |
plot_pmx.pmx_vpc |
This is a generic plot method that produces all plots by default described in pmx model evaluation guidance. |
plot_pmx.residual |
This function plots residual for each observed value by finding the difference between observed and predicted points. It also fits a distribution to the residual value. |
plot_shrink |
Plot shrink in eta matric |
pmx |
Create a pmx object |
pmxOptions |
This function can be used to set ggPMX options |
pmx_bloq |
Creates BLOQ object attributes |
pmx_comp_shrink |
Compute Shrinkage |
pmx_config |
This function can be used to define the pmx configuration used in plots. e.g. Monolix/Nonmem |
pmx_copy |
Creates a deep copy of the controller |
pmx_cov |
Select/Map covariates using human labels |
pmx_dens |
Creates a density plot object |
pmx_endpoint |
Creates pmx endpoint object |
pmx_filter |
filter data in a pmx controller |
pmx_get_configs |
Get List of built-in configurations |
pmx_gpar |
Handling pmx Graphical parameters |
pmx_list_nm_tables |
List NONMEM output tables |
pmx_manual_nm_import |
Manually define nonmem tables to be imported |
pmx_mlx |
Create a pmx object |
pmx_mlxtran |
Create a pmx object |
pmx_nlmixr |
Creates pmx controller from an nlimxr fit object |
pmx_nm |
Creates pmx controller from NONMEM model outputs |
pmx_plot |
Generic pmx plot |
pmx_plot_abs_iwres_ipred |
Scatter residual plots |
pmx_plot_abs_iwres_time |
Scatter residual plots |
pmx_plot_cats |
Generic pmx stratified plot |
pmx_plot_cwres_cpred |
Scatter residual plots |
pmx_plot_cwres_pred |
Scatter residual plots |
pmx_plot_cwres_qq |
Quantile-quantile plots |
pmx_plot_cwres_time |
Scatter residual plots |
pmx_plot_dv_ipred |
Scatter residual plots |
pmx_plot_dv_pred |
Scatter residual plots |
pmx_plot_eta_box |
Eta distribution plots |
pmx_plot_eta_cats |
Eta Covariates plots |
pmx_plot_eta_conts |
Eta Covariates plots |
pmx_plot_eta_hist |
Eta distribution plots |
pmx_plot_eta_matrix |
Eta matrix plot |
pmx_plot_eta_qq |
Quantile-quantile plots |
pmx_plot_individual |
Individual plot |
pmx_plot_iwres_dens |
IWRES density plot |
pmx_plot_iwres_ipred |
Scatter residual plots |
pmx_plot_iwres_qq |
Quantile-quantile plots |
pmx_plot_iwres_time |
Scatter residual plots |
pmx_plot_npde_pred |
Scatter residual plots |
pmx_plot_npde_qq |
Quantile-quantile plots |
pmx_plot_npde_time |
Scatter residual plots |
pmx_plot_npd_epred |
Scatter residual plots |
pmx_plot_npd_pred |
Scatter residual plots |
pmx_plot_npd_qq |
Quantile-quantile plots |
pmx_plot_npd_time |
Scatter residual plots |
pmx_plot_vpc |
VPC plot |
pmx_qq |
This function creates a qq plot object |
pmx_qq_plot |
Quantile-quantile plots |
pmx_read_nm_files |
NONMEM output file import function |
pmx_read_nm_model |
NONMEM model file parser |
pmx_read_nm_tables |
NONMEM output table import function |
pmx_register_plot |
Register plot |
pmx_report |
Generates ggpmX report from a pre-defined template |
pmx_report_template |
Gets build-in report templates |
pmx_settings |
Create controller global settings |
pmx_shrink |
Create shrinkage parameter object |
pmx_sim |
Create simulation object |
pmx_theme |
Define ggPMX theme |
pmx_update |
Update plot object |
pmx_vpc |
Creates vpc object |
pmx_vpc_bin |
Creates vpc bins |
pmx_vpc_ci |
Sets vpc confidence interval layer |
pmx_vpc_obs |
Sets vpc observation layer |
pmx_vpc_pi |
Sets vpc percentile layer |
pmx_vpc_rug |
Sets vpc rug layer |
print.abbreviation |
S3 print abbreviation |
print.configs |
This function can be used to print configuration of the defined object using S3 method. |
print.pmxClass |
Print pmxClass object |
print.pmxConfig |
S3 method print pmxConfig object |
print.pmx_gpar |
Print pmx_gpar object |