AddUnmapped |
Add unmapped probe |
baseModel |
Prediction by Machine Learning |
BioM2 |
Biologically Explainable Machine Learning Framework |
FindParaModule |
Find suitable parameters for partitioning pathways modules |
GO2ALLEGS_BP |
An example about pathlistDB |
GO_Ancestor |
Pathways in the GO database and their Ancestor |
GO_Ancestor_exact |
Pathways in the GO database and their Ancestor |
HybaseModel |
Selection of the optimal base model |
HyBioM2 |
BioM2 Hyperparametric Combination |
MethylAnno |
An example about FeatureAnno for methylation data |
MethylData_Test |
An example about TrainData/TestData for methylation data |
PathwaysModule |
Delineate differential pathway modules with high biological interpretability |
PlotCorModule |
Correlalogram for Biological Differences Modules |
PlotPathFearture |
Visualisation of significant pathway-level features |
PlotPathInner |
Visualisation Original features that make up the pathway |
PlotPathNet |
Network diagram of pathways-level features |
ShowModule |
Display biological information within each pathway module |
Stage1_FeartureSelection |
Stage 1 Fearture Selection |
Stage2_FeartureSelection |
Stage 2 Fearture Selection |
TransAnno |
An example about FeatureAnno for gene expression |
TransData_Test |
An example about TrainData/TestData for gene expression |
VisMultiModule |
Visualisation of the results of the analysis of the pathway modules |