agg_to_daily |
Infer daily counts from aggregates |
cl.data |
Sample of aggregated clinical reports |
def_dist |
Define a family of distributions. |
estimate_R_cl |
Estimate the effective reproduction from clinical report data |
estimate_R_ww |
Estimate the effective reproduction from wastewater concentration data. |
extract_mcmc_values |
Extract MCMC chains from a JAGS object |
get_discrete_dist |
Get a discretized, truncated version of a distribution |
linear_int_daily |
Daily incidence from linear interpolation |
plot_diagnostic_cl |
Diagnostic plot for R estimation from clinical report data |
plot_diagnostic_ww |
Diagnostic plot for R estimation from wastewater data |
plot_dist |
Plot a distribution |
plot_gelman_rubin |
Plot the Gelman Rubin statistic for all parameters. |
plot_traces |
Plot MCMC traces |
ww.data |
Sample of wastewater concentration |