Effective Reproduction Number Estimation
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Documentation for package ‘ern’ version 2.0.0
Help Pages
| agg_to_daily | Infer daily counts from aggregates |
| cl.data | Sample of aggregated clinical reports |
| def_dist | Define a family of distributions. |
| estimate_R_cl | Estimate the effective reproduction from clinical report data |
| estimate_R_ww | Estimate the effective reproduction from wastewater concentration data. |
| extract_mcmc_values | Extract MCMC chains from a JAGS object |
| get_discrete_dist | Get a discretized, truncated version of a distribution |
| linear_int_daily | Daily incidence from linear interpolation |
| plot_diagnostic_cl | Diagnostic plot for R estimation from clinical report data |
| plot_diagnostic_ww | Diagnostic plot for R estimation from wastewater data |
| plot_dist | Plot a distribution |
| plot_gelman_rubin | Plot the Gelman Rubin statistic for all parameters. |
| plot_traces | Plot MCMC traces |
| ww.data | Sample of wastewater concentration |