Variable, Diversity and Joining Sequences from Various Species
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Documentation for package ‘VDJgermlines’ version 0.1
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| extractSequencesR | Extracts the germline genes of interest and stores them as a dataframe |
| VDJgermlines | VDJgermlines |
| VDJheatmap | Calculates the distance between VDJ germlines of interest and produces a matrix that can be used for further analysis or viewed using Heatmap/pheatmap/ComplexHeatmap. |
| VDJphylo | Infers basic phylogenetic trees of VDJ germlines of interest with basic distance methods. |